Aliases for UICLM Gene

Subcategory (RNA class) for UICLM Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for UICLM Gene

  • Up-Regulated In Colorectal Cancer Liver Metastasis 2 3
  • CROCC2 Antisense RNA 1 2 3
  • CROCC2-AS1 2 3
  • Novel Transcript 5
  • NONHSAG031002.2 91
  • Lnc-C2orf54-1 165
  • HSALNG0023630 164
  • AC104809.2 5

External Ids for UICLM Gene

Summaries for UICLM Gene

GeneCards Summary for UICLM Gene

UICLM (Up-Regulated In Colorectal Cancer Liver Metastasis) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for UICLM Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for UICLM Gene

Genomics for UICLM Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for UICLM Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240968 Enhancer 0.8 CraniofacialAtlas 600.7 -1.6 -1632 0.2 HNRNPL GATAD2A RCOR2 RBFOX2 RXRB IRF2 SP1 KAT7 ZNF205 PCBP1 UICLM ENSG00000223991 SNED1 CROCC2
GH02J240967 Promoter 0.5 Ensembl 600.7 +0.6 551 0.2 HNRNPL BRD4 UICLM RF00017-3479 SNED1 CROCC2
GH02J240966 Enhancer 0.2 FANTOM5 600.7 +1.3 1295 0.2 UICLM MAB21L4 DUSP28 RF00017-3479 SNED1 CROCC2
GH02J240959 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 +6.2 6186 4.3 HNRNPL GATAD2A PRDM10 SOX13 RCOR2 PRDM1 RFX1 ZIC2 ZSCAN4 RBFOX2 ENSG00000223374 UICLM MAB21L4 SNED1 RF00017-3479 CROCC2
GH02J240920 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +45.5 45532 3 HNRNPL JUND ESR1 FOS NFIC BHLHE40 NFIB HIC1 GLIS1 NR3C1 UICLM MAB21L4 SNED1 GPC1 LOC112268440 CROCC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around UICLM on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for UICLM Gene

Genomic Locations for UICLM Gene
chr2:240,954,617-240,967,452
(GRCh38/hg38)
Size:
12,836 bases
Orientation:
Minus strand
chr2:241,894,034-241,906,868
(GRCh37/hg19)
Size:
12,835 bases
Orientation:
Minus strand

Genomic View for UICLM Gene

Genes around UICLM on UCSC Golden Path with GeneCards custom track
UICLM in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
UICLM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UICLM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UICLM Gene

Proteins for UICLM Gene

No data available for DME Specific Peptides for UICLM Gene

Domains & Families for UICLM Gene

Gene Families for UICLM Gene

genes like me logo Genes that share domains with UICLM: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for UICLM Gene

Function for UICLM Gene

Phenotypes From GWAS Catalog for UICLM Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UICLM Gene

Localization for UICLM Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UICLM Gene

Pathways & Interactions for UICLM Gene

PathCards logo

SuperPathways for UICLM Gene

No Data Available

Gene Ontology (GO) - Biological Process for UICLM Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for UICLM Gene

Drugs & Compounds for UICLM Gene

No Compound Related Data Available

Transcripts for UICLM Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for UICLM Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EAD4_9606 lncRNA 2274 4

RefSeq: NR_033841,

Ensembl: ENST00000418218 (view in UCSC) ,

LNCipedia: lnc-C2orf54-1:1,

NONCODE: NONHSAT077867.2,

URS00008B6FB3_9606 lncRNA 800 3

Ensembl: ENST00000457369 (view in UCSC) ,

LNCipedia: lnc-C2orf54-1:4,

NONCODE: NONHSAT077868.2,

URS00008BF385_9606 lncRNA 431 2

LncBook: HSALNT0049839,

LNCipedia: lnc-C2orf54-1:6,

URS00009B292A_9606 lncRNA 2699 1

NONCODE: NONHSAT186537.1,

URS00008B35E2_9606 lncRNA 2272 1

LNCipedia: lnc-C2orf54-1:5,

UICLM in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for UICLM Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UICLM Gene

No ASD Table

Relevant External Links for UICLM Gene

GeneLoc Exon Structure for
UICLM

Expression for UICLM Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for UICLM

SOURCE GeneReport for Unigene cluster for UICLM Gene:

Hs.647893
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UICLM Gene

Orthologs for UICLM Gene

Evolution for UICLM Gene

ENSEMBL:
Gene Tree for UICLM (if available)
TreeFam:
Gene Tree for UICLM (if available)

No data available for Orthologs for UICLM Gene

Paralogs for UICLM Gene

No data available for Paralogs for UICLM Gene

Variants for UICLM Gene

Additional dbSNP identifiers (rs#s) for UICLM Gene

Structural Variations from Database of Genomic Variants (DGV) for UICLM Gene

Variant ID Type Subtype PubMed ID
esv2721963 CNV deletion 23290073
esv3381583 CNV duplication 20981092
nsv460167 CNV gain 19166990
nsv584861 CNV gain 21841781
nsv955295 CNV deletion 24416366

Additional Variant Information for UICLM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UICLM

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for UICLM Gene

Disorders for UICLM Gene

Additional Disease Information for UICLM

No disorders were found for UICLM Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UICLM Gene

Publications for UICLM Gene

  1. Long non-coding RNA UICLM promotes colorectal cancer liver metastasis by acting as a ceRNA for microRNA-215 to regulate ZEB2 expression. (PMID: 29187907) Chen DL … Xu RH (Theranostics 2017) 2 3

No data available for Mastermind for UICLM Gene

Products for UICLM Gene

Sources for UICLM Gene