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Aliases for UCHL1-AS1 Gene

Subcategory (RNA class) for UCHL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UCHL1-AS1 Gene

  • UCHL1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for UCHL1-AS1 Gene

Summaries for UCHL1-AS1 Gene

GeneCards Summary for UCHL1-AS1 Gene

UCHL1-AS1 (UCHL1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UCHL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UCHL1-AS1 Gene

Genomics for UCHL1-AS1 Gene

GeneHancer (GH) Regulatory Elements for UCHL1-AS1 Gene

Promoters and enhancers for UCHL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I041256 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -0.9 -928 2.8 SIN3A ZNF2 YY1 ZNF121 GLIS2 KLF7 SP3 REST ZNF518A SREBF1 UCHL1 UCHL1-AS1 SLC30A9 GC04P041269 PIR50176
GH04I041211 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.5 +42.0 41984 6.3 PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 APBB2 ATP1B1P1 UCHL1 UCHL1-AS1 ENSG00000250906 SLC30A9 RNU6-1195P
GH04I040989 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +264.2 264161 5.9 HDGF FEZF1 BATF ZNF2 IRF4 ZNF366 ATF7 ETV6 FOS BCLAF1 APBB2 UCHL1-AS1 UCHL1 RBM47 RNA5SP160 GC04M041050
GH04I040976 Enhancer 1 Ensembl ENCODE dbSUPER 10.1 +280.2 280226 0.6 CTCF RXRA TRIM22 THRB RAD21 ZNF592 KAT8 ZNF121 KLF16 SMC3 APBB2 RNU6-836P UCHL1-AS1 UCHL1 RNA5SP160 GC04M040906
GH04I040998 Enhancer 1 FANTOM5 Ensembl ENCODE 9.7 +257.9 257851 1.7 SP1 JUND JUN FOSL2 RNU6-836P UCHL1 UCHL1-AS1 RBM47 RNA5SP160 GC04M041050 APBB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UCHL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UCHL1-AS1 Gene

Genomic Locations for UCHL1-AS1 Gene
chr4:41,220,074-41,256,727
(GRCh38/hg38)
Size:
36,654 bases
Orientation:
Minus strand
chr4:41,222,091-41,258,744
(GRCh37/hg19)

Genomic View for UCHL1-AS1 Gene

Genes around UCHL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UCHL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UCHL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UCHL1-AS1 Gene

Proteins for UCHL1-AS1 Gene

Post-translational modifications for UCHL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UCHL1-AS1 Gene

Domains & Families for UCHL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UCHL1-AS1 Gene

Function for UCHL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UCHL1-AS1 Gene

Localization for UCHL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UCHL1-AS1 Gene

Pathways & Interactions for UCHL1-AS1 Gene

SuperPathways for UCHL1-AS1 Gene

No Data Available

Interacting Proteins for UCHL1-AS1 Gene

Gene Ontology (GO) - Biological Process for UCHL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UCHL1-AS1 Gene

Drugs & Compounds for UCHL1-AS1 Gene

No Compound Related Data Available

Transcripts for UCHL1-AS1 Gene

mRNA/cDNA for UCHL1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UCHL1-AS1 Gene

No ASD Table

Relevant External Links for UCHL1-AS1 Gene

GeneLoc Exon Structure for
UCHL1-AS1
ECgene alternative splicing isoforms for
UCHL1-AS1

Expression for UCHL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UCHL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UCHL1-AS1 Gene

This gene is overexpressed in Pituitary (x6.5), Brain - Hippocampus (x5.4), Brain - Frontal Cortex (BA9) (x4.9), Brain - Nucleus accumbens (basal ganglia) (x4.4), Brain - Cortex (x4.3), Brain - Caudate (basal ganglia) (x4.2), and Brain - Hypothalamus (x4.1).
genes like me logo Genes that share expression patterns with UCHL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UCHL1-AS1 Gene

Orthologs for UCHL1-AS1 Gene

Evolution for UCHL1-AS1 Gene

ENSEMBL:
Gene Tree for UCHL1-AS1 (if available)
TreeFam:
Gene Tree for UCHL1-AS1 (if available)

No data available for Orthologs for UCHL1-AS1 Gene

Paralogs for UCHL1-AS1 Gene

No data available for Paralogs for UCHL1-AS1 Gene

Variants for UCHL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for UCHL1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs11556271 likely-benign, Parkinson Disease, Dominant 41,256,953(-) A/C/G upstream_transcript_variant
rs11556273 likely-benign, Parkinson Disease, Dominant 41,257,132(-) T/C upstream_transcript_variant
rs201100258 uncertain-significance, Parkinson Disease, Dominant 41,256,906(-) C/G upstream_transcript_variant
rs397515634 pathogenic, Spastic paraplegia 79, autosomal recessive 41,256,996(-) A/C upstream_transcript_variant
rs5030732 uncertain-significance, benign, Parkinson disease 5, Parkinson Disease, Dominant 41,257,616(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for UCHL1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1478e212 CNV loss 25503493
esv2677426 CNV deletion 23128226
esv3563761 CNV deletion 23714750
esv3600330 CNV loss 21293372
nsv829914 CNV loss 17160897

Additional Variant Information for UCHL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UCHL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UCHL1-AS1 Gene

Disorders for UCHL1-AS1 Gene

Additional Disease Information for UCHL1-AS1

No disorders were found for UCHL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UCHL1-AS1 Gene

Publications for UCHL1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for UCHL1-AS1 Gene

Sources for UCHL1-AS1 Gene

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