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Aliases for UBTD1 Gene

Aliases for UBTD1 Gene

  • Ubiquitin Domain Containing 1 2 3 5

External Ids for UBTD1 Gene

Previous GeneCards Identifiers for UBTD1 Gene

  • GC10P098924
  • GC10P099248
  • GC10P092884

Summaries for UBTD1 Gene

Entrez Gene Summary for UBTD1 Gene

  • The degradation of many proteins is carried out by the ubiquitin pathway in which proteins are targeted for degradation by covalent conjugation of the polypeptide ubiquitin. This gene encodes a protein that belongs to the ubiquitin family of proteins. The encoded protein is thought to regulate E2 ubiquitin conjugating enzymes belonging to the UBE2D family. [provided by RefSeq, Mar 2014]

GeneCards Summary for UBTD1 Gene

UBTD1 (Ubiquitin Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is UBTD2.

UniProtKB/Swiss-Prot for UBTD1 Gene

  • May be involved in the regulation of cellular senescence through a positive feedback loop with TP53. Is a TP53 downstream target gene that increases the stability of TP53 protein by promoting the ubiquitination and degradation of MDM2.

Additional gene information for UBTD1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBTD1 Gene

Genomics for UBTD1 Gene

GeneHancer (GH) Regulatory Elements for UBTD1 Gene

Promoters and enhancers for UBTD1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I097497 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.3 293 3.9 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 MMS19 UBTD1 ZDHHC16 ANKRD2 MORN4 GC10P097506
GH10I097639 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 +142.3 142298 2.7 HDGF PKNOX1 FOXA2 ARID4B SIN3A YY1 ZNF213 ZNF143 FOS SP3 PI4K2A R3HCC1L MORN4 ZFYVE27 HPS1 ANKRD2 AVPI1 C10orf62 ENSG00000249967 HOGA1
GH10I097444 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 -52.2 -52182 3.7 PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZDHHC16 EXOSC1 PGAM1 ENSG00000200737 RRP12 MMS19 UBTD1 ANKRD2
GH10I097399 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.8 -98.0 -97991 2.5 FOXA2 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 E2F8 FOS SP3 ZHX2 RRP12 ENSG00000231970 ENSG00000200737 PGAM1 MMS19 UBTD1 ARHGAP19 RPL34P20 LOC644215
GH10I097537 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +42.5 42480 6.8 PKNOX1 ZFP64 ARID4B NEUROD1 SIN3A ZNF2 ZNF121 GLIS2 FOS REST GC10P097540 PI4K2A ANKRD2 UBTD1 MMS19 ENSG00000249967 HOGA1 C10orf62 RRP12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UBTD1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the UBTD1 gene promoter:

Genomic Locations for UBTD1 Gene

Genomic Locations for UBTD1 Gene
72,343 bases
Plus strand

Genomic View for UBTD1 Gene

Genes around UBTD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBTD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBTD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBTD1 Gene

Proteins for UBTD1 Gene

  • Protein details for UBTD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Ubiquitin domain-containing protein 1
    Protein Accession:
    Secondary Accessions:
    • D3DR57
    • Q53HI3

    Protein attributes for UBTD1 Gene

    227 amino acids
    Molecular mass:
    25938 Da
    Quaternary structure:
    • Interacts with UBTD1.

neXtProt entry for UBTD1 Gene

Post-translational modifications for UBTD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UBTD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for UBTD1 Gene

Domains & Families for UBTD1 Gene

Gene Families for UBTD1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for UBTD1 Gene

Suggested Antigen Peptide Sequences for UBTD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with UBTD1: view

No data available for UniProtKB/Swiss-Prot for UBTD1 Gene

Function for UBTD1 Gene

Molecular function for UBTD1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in the regulation of cellular senescence through a positive feedback loop with TP53. Is a TP53 downstream target gene that increases the stability of TP53 protein by promoting the ubiquitination and degradation of MDM2.
UniProtKB/Swiss-Prot Induction:
Induced by cytotoxic agents, it is also increased during premature senescence. the induction seems to be mediated by TP53.

Phenotypes From GWAS Catalog for UBTD1 Gene

Gene Ontology (GO) - Molecular Function for UBTD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0043130 ubiquitin binding IEA --
genes like me logo Genes that share ontologies with UBTD1: view
genes like me logo Genes that share phenotypes with UBTD1: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBTD1 Gene

Localization for UBTD1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UBTD1 gene
Compartment Confidence
plasma membrane 2
nucleus 2
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Plasma membrane (2)
  • Vesicles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for UBTD1 Gene

Pathways & Interactions for UBTD1 Gene

SuperPathways for UBTD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UBTD1 Gene


No data available for Pathways by source and SIGNOR curated interactions for UBTD1 Gene

Drugs & Compounds for UBTD1 Gene

No Compound Related Data Available

Transcripts for UBTD1 Gene

mRNA/cDNA for UBTD1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(118) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UBTD1 Gene

Ubiquitin domain containing 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBTD1 Gene

No ASD Table

Relevant External Links for UBTD1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UBTD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBTD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for UBTD1 Gene

This gene is overexpressed in Breast (42.5), Testis (15.7), and Ovary (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for UBTD1 Gene

Protein tissue co-expression partners for UBTD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UBTD1 Gene:


SOURCE GeneReport for Unigene cluster for UBTD1 Gene:

genes like me logo Genes that share expression patterns with UBTD1: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBTD1 Gene

Orthologs for UBTD1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for UBTD1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia UBTD1 33 34
  • 99.56 (n)
(Bos Taurus)
Mammalia UBTD1 33 34
  • 93.83 (n)
(Canis familiaris)
Mammalia UBTD1 33 34
  • 93.33 (n)
(Rattus norvegicus)
Mammalia Ubtd1 33
  • 92.66 (n)
(Mus musculus)
Mammalia Ubtd1 33 16 34
  • 90.9 (n)
(Ornithorhynchus anatinus)
Mammalia UBTD1 34
  • 78 (a)
(Gallus gallus)
Aves UBTD1 33 34
  • 81.86 (n)
(Anolis carolinensis)
Reptilia UBTD1 34
  • 83 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia ubtd1 33
  • 72.37 (n)
(Danio rerio)
Actinopterygii ubtd1b 33 34
  • 69.79 (n)
ubtd1a 34
  • 67 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG1172 34
  • 44 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G45740 33
  • 52.22 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5948 34
  • 52 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8466 33
Species where no ortholog for UBTD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for UBTD1 Gene

Gene Tree for UBTD1 (if available)
Gene Tree for UBTD1 (if available)

Paralogs for UBTD1 Gene

Paralogs for UBTD1 Gene

(2) SIMAP similar genes for UBTD1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with UBTD1: view

Variants for UBTD1 Gene

Sequence variations from dbSNP and Humsavar for UBTD1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000014381 -- 97,544,609(+) A/T intron_variant
rs1000021802 -- 97,511,064(+) C/T intron_variant
rs1000051311 -- 97,511,460(+) C/T intron_variant
rs1000054157 -- 97,552,704(+) A/G intron_variant
rs1000088745 -- 97,562,806(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for UBTD1 Gene

Variant ID Type Subtype PubMed ID
esv1218822 CNV deletion 17803354
esv3348273 CNV insertion 20981092
esv3624316 CNV loss 21293372
esv992861 CNV deletion 20482838
nsv1036494 CNV gain 25217958
nsv1047359 CNV gain 25217958
nsv1110852 OTHER inversion 24896259
nsv7508 CNV deletion 18451855
nsv7509 CNV insertion 18451855

Variation tolerance for UBTD1 Gene

Residual Variation Intolerance Score: 48.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.62; 13.29% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for UBTD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UBTD1 Gene

Disorders for UBTD1 Gene

Additional Disease Information for UBTD1

No disorders were found for UBTD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBTD1 Gene

Publications for UBTD1 Gene

  1. UBTD1 induces cellular senescence through an UBTD1-Mdm2/p53 positive feedback loop. (PMID: 25382750) Zhang XW … Guo WJ (The Journal of pathology 2015) 3 4 58
  2. The UbL protein UBTD1 stably interacts with the UBE2D family of E2 ubiquitin conjugating enzymes. (PMID: 24211586) Uhler JP … Gustafsson CM (Biochemical and biophysical research communications 2014) 3 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58

Products for UBTD1 Gene

Sources for UBTD1 Gene

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