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Aliases for UBOX5-AS1 Gene

Subcategory (RNA class) for UBOX5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBOX5-AS1 Gene

  • UBOX5 Antisense RNA 1 2 3 5
  • UBOX5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UBOX5-AS1 Gene

Previous GeneCards Identifiers for UBOX5-AS1 Gene

  • GC20P003088

Summaries for UBOX5-AS1 Gene

GeneCards Summary for UBOX5-AS1 Gene

UBOX5-AS1 (UBOX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBOX5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBOX5-AS1 Gene

Genomics for UBOX5-AS1 Gene

GeneHancer (GH) Regulatory Elements for UBOX5-AS1 Gene

Promoters and enhancers for UBOX5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I003106 Enhancer 1 Ensembl ENCODE 550.8 +0.2 183 0.9 ELF3 MLX ARID4B DMAP1 THRB ZNF48 RARA CREM THAP11 MIXL1 UBOX5-AS1 LZTS3 MRPS26 GNRH2 OXT UBOX5 ITPA GC20P003124
GH20I003104 Enhancer 0.5 ENCODE 550.8 -1.8 -1841 0.2 CTCF IKZF1 NR2F1 ZNF143 NR2F6 HOMEZ RAD21 UBOX5-AS1 LZTS3 MRPS26 GNRH2 OXT RN7SL555P
GH20I003887 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 15 +782.9 782927 4.7 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ENSG00000229539 PANK2 GC20M003886 UBOX5-AS1 UBOX5 ADAM33 RNF24 PRND GC20P003875 GC20P003918
GH20I003172 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 12.1 +67.4 67361 3.3 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 LZTS3 GC20P003173 ITPA DDRGK1 ZNF343 UBOX5-AS1 SNRPB ENSG00000229539 AVP OXT
GH20I003156 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.2 +51.6 51631 4.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 UBOX5 FASTKD5 ENSG00000229539 ZNF343 VPS16 UBOX5-AS1 IDH3B ITPA SNRPB C20orf194
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UBOX5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UBOX5-AS1 Gene

Genomic Locations for UBOX5-AS1 Gene
chr20:3,106,911-3,150,867
(GRCh38/hg38)
Size:
43,957 bases
Orientation:
Plus strand
chr20:3,087,557-3,131,513
(GRCh37/hg19)

Genomic View for UBOX5-AS1 Gene

Genes around UBOX5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBOX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBOX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBOX5-AS1 Gene

Proteins for UBOX5-AS1 Gene

Post-translational modifications for UBOX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBOX5-AS1 Gene

Domains & Families for UBOX5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBOX5-AS1 Gene

Function for UBOX5-AS1 Gene

Phenotypes From GWAS Catalog for UBOX5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBOX5-AS1 Gene

Localization for UBOX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBOX5-AS1 Gene

Pathways & Interactions for UBOX5-AS1 Gene

SuperPathways for UBOX5-AS1 Gene

No Data Available

Interacting Proteins for UBOX5-AS1 Gene

Gene Ontology (GO) - Biological Process for UBOX5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBOX5-AS1 Gene

Drugs & Compounds for UBOX5-AS1 Gene

No Compound Related Data Available

Transcripts for UBOX5-AS1 Gene

mRNA/cDNA for UBOX5-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UBOX5-AS1 Gene

UBOX5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UBOX5-AS1 Gene

No ASD Table

Relevant External Links for UBOX5-AS1 Gene

GeneLoc Exon Structure for
UBOX5-AS1
ECgene alternative splicing isoforms for
UBOX5-AS1

Expression for UBOX5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBOX5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UBOX5-AS1 Gene

This gene is overexpressed in Testis (x4.4).

SOURCE GeneReport for Unigene cluster for UBOX5-AS1 Gene:

Hs.129448
genes like me logo Genes that share expression patterns with UBOX5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBOX5-AS1 Gene

Orthologs for UBOX5-AS1 Gene

Evolution for UBOX5-AS1 Gene

ENSEMBL:
Gene Tree for UBOX5-AS1 (if available)
TreeFam:
Gene Tree for UBOX5-AS1 (if available)

No data available for Orthologs for UBOX5-AS1 Gene

Paralogs for UBOX5-AS1 Gene

No data available for Paralogs for UBOX5-AS1 Gene

Variants for UBOX5-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBOX5-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000005551 -- 3,119,462(+) G/A intron_variant
rs1000098150 -- 3,137,239(+) C/G intron_variant
rs1000210640 -- 3,130,469(+) C/T intron_variant
rs1000276147 -- 3,126,651(+) G/A intron_variant
rs1000331277 -- 3,139,337(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for UBOX5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833898 CNV gain+loss 17160897
nsv833897 CNV loss 17160897
nsv585276 CNV gain 21841781
nsv526273 CNV loss 19592680
nsv524482 CNV gain 19592680
nsv521437 CNV loss 19592680
nsv180149 CNV deletion 16902084
nsv1136497 CNV deletion 24896259
nsv1127811 CNV deletion 24896259
esv3645031 CNV loss 21293372

Additional Variant Information for UBOX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBOX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UBOX5-AS1 Gene

Disorders for UBOX5-AS1 Gene

Additional Disease Information for UBOX5-AS1

No disorders were found for UBOX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBOX5-AS1 Gene

Publications for UBOX5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for UBOX5-AS1 Gene

Sources for UBOX5-AS1 Gene

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