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Aliases for UBBP1 Gene

Aliases for UBBP1 Gene

  • Ubiquitin B Pseudogene 1 2 3 5

External Ids for UBBP1 Gene

Previous GeneCards Identifiers for UBBP1 Gene

  • GC02U990085
  • GC02M137109
  • GC02M137297
  • GC02M136920
  • GC02M136803

Summaries for UBBP1 Gene

GeneCards Summary for UBBP1 Gene

UBBP1 (Ubiquitin B Pseudogene 1) is a Pseudogene.

Additional gene information for UBBP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBBP1 Gene

Genomics for UBBP1 Gene

GeneHancer (GH) Regulatory Elements for UBBP1 Gene

Promoters and enhancers for UBBP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I136326 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.8 +2.4 2368 1.8 PKNOX1 NFIB NEUROD1 BMI1 BATF KLF5 IRF4 TCF12 EGR1 SCRT2 CXCR4 UBBP1 ENSG00000279024
GH02I136324 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.8 +4.8 4801 2.4 PKNOX1 FOXA2 SMAD1 BMI1 YBX1 THRB POLR2A ATF7 NFE2 NR2F6 CXCR4 UBBP1 ENSG00000279024
GH02I136322 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.4 +7.4 7405 0.7 CTCF CXCR4 UBBP1 ENSG00000279024
GH02I136235 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +91.8 91824 5.4 HDGF PKNOX1 BMI1 BATF KLF5 BRCA1 RAD21 ZNF766 RCOR1 ATF7 CXCR4 UBXN4 MCM6 ENSG00000279024 UBBP1
GH02I136247 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +81.9 81850 1.7 FEZF1 GLI4 ZNF2 GLIS2 ZNF213 FOS SP3 YY2 REST TSHZ1 UBXN4 ZRANB3 R3HDM1 CXCR4 ENSG00000279024 UBBP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UBBP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UBBP1 Gene

Genomic Locations for UBBP1 Gene
chr2:136,329,300-136,330,002
(GRCh38/hg38)
Size:
703 bases
Orientation:
Minus strand
chr2:137,086,870-137,087,582
(GRCh37/hg19)

Genomic View for UBBP1 Gene

Genes around UBBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBBP1 Gene

Proteins for UBBP1 Gene

Post-translational modifications for UBBP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBBP1 Gene

Domains & Families for UBBP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBBP1 Gene

Function for UBBP1 Gene

Molecular function for UBBP1 Gene

GENATLAS Biochemistry:
ubiquitin B,pseudogene 1

Phenotypes From GWAS Catalog for UBBP1 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBBP1 Gene

Localization for UBBP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBBP1 Gene

Pathways & Interactions for UBBP1 Gene

SuperPathways for UBBP1 Gene

No Data Available

Interacting Proteins for UBBP1 Gene

Gene Ontology (GO) - Biological Process for UBBP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBBP1 Gene

Drugs & Compounds for UBBP1 Gene

No Compound Related Data Available

Transcripts for UBBP1 Gene

mRNA/cDNA for UBBP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBBP1 Gene

No ASD Table

Relevant External Links for UBBP1 Gene

GeneLoc Exon Structure for
UBBP1
ECgene alternative splicing isoforms for
UBBP1

Expression for UBBP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBBP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UBBP1 Gene:

UBBP1
genes like me logo Genes that share expression patterns with UBBP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBBP1 Gene

Orthologs for UBBP1 Gene

Evolution for UBBP1 Gene

ENSEMBL:
Gene Tree for UBBP1 (if available)
TreeFam:
Gene Tree for UBBP1 (if available)

No data available for Orthologs for UBBP1 Gene

Paralogs for UBBP1 Gene

No data available for Paralogs for UBBP1 Gene

Variants for UBBP1 Gene

Additional Variant Information for UBBP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBBP1 Gene

Disorders for UBBP1 Gene

Additional Disease Information for UBBP1

Genetic Association Database
(GAD)

No disorders were found for UBBP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBBP1 Gene

Publications for UBBP1 Gene

  1. Genome-wide association study of pancreatic cancer in Japanese population. (PMID: 20686608) Low SK … Sakamoto H (PloS one 2010) 44 58
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 44 58
  3. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S … Wolf PA (BMC medical genetics 2007) 44 58
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58
  5. Genome-wide association of sleep and circadian phenotypes. (PMID: 17903308) Gottlieb DJ … Wilk JB (BMC medical genetics 2007) 44 58

Products for UBBP1 Gene

Sources for UBBP1 Gene

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