Aliases for UBBP1 Gene

Aliases for UBBP1 Gene

  • Ubiquitin B Pseudogene 1 2 3 5
  • UBBP1 5

External Ids for UBBP1 Gene

Previous GeneCards Identifiers for UBBP1 Gene

  • GC02U990085
  • GC02M137109
  • GC02M137297
  • GC02M136920
  • GC02M136803

Summaries for UBBP1 Gene

GeneCards Summary for UBBP1 Gene

UBBP1 (Ubiquitin B Pseudogene 1) is a Pseudogene.

Additional gene information for UBBP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for UBBP1 Gene

Genomics for UBBP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for UBBP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J136330 Enhancer 0.2 Ensembl 600.7 -1.4 -1389 1.2 UBBP1 CXCR4 HSALNG0019109 THSD7B
GH02J136326 Enhancer 1.1 FANTOM5 ENCODE 0.7 +2.4 2378 1.8 SP1 CREB1 BACH1 TARDBP JUND RELA ZIC2 TCF12 IKZF2 RCOR1 CXCR4 UBBP1 HSALNG0019103 THSD7B
GH02J136327 Enhancer 0.9 FANTOM5 ENCODE 0.7 +3.8 3785 0.2 TCF12 IKZF2 PKNOX1 ARID3A DPF2 ZNF592 BCL11A ARNT IKZF1 BMI1 CXCR4 UBBP1 HSALNG0019103 THSD7B
GH02J136324 Enhancer 0.6 ENCODE 0.7 +4.9 4860 0.9 RXRB GABPA CEBPA YBX1 NFE2 MAFF NR2C2 MAFK NR2C1 NR2F1 UBBP1 HSALNG0019103 CXCR4 THSD7B
GH02J136305 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +24.3 24342 0.9 TCF12 DPF2 RELB RUNX3 GATAD2B CBFB ZNF592 NBN USF2 HDGF CXCR4 HSALNG0019103 UBBP1 THSD7B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around UBBP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for UBBP1 Gene

Genomic Locations for UBBP1 Gene
chr2:136,329,300-136,330,012
(GRCh38/hg38)
Size:
713 bases
Orientation:
Minus strand
chr2:137,086,870-137,087,582
(GRCh37/hg19)
Size:
713 bases
Orientation:
Minus strand

Genomic View for UBBP1 Gene

Genes around UBBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBBP1 Gene

Proteins for UBBP1 Gene

No data available for DME Specific Peptides for UBBP1 Gene

Domains & Families for UBBP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for UBBP1 Gene

Function for UBBP1 Gene

Molecular function for UBBP1 Gene

GENATLAS Biochemistry:
ubiquitin B,pseudogene 1

Phenotypes From GWAS Catalog for UBBP1 Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBBP1 Gene

Localization for UBBP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBBP1 Gene

Pathways & Interactions for UBBP1 Gene

PathCards logo

SuperPathways for UBBP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UBBP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for UBBP1 Gene

Drugs & Compounds for UBBP1 Gene

No Compound Related Data Available

Transcripts for UBBP1 Gene

mRNA/cDNA for UBBP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBBP1 Gene

No ASD Table

Relevant External Links for UBBP1 Gene

GeneLoc Exon Structure for
UBBP1

Expression for UBBP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UBBP1 Gene

genes like me logo Genes that share expression patterns with UBBP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBBP1 Gene

Orthologs for UBBP1 Gene

Evolution for UBBP1 Gene

ENSEMBL:
Gene Tree for UBBP1 (if available)
TreeFam:
Gene Tree for UBBP1 (if available)

No data available for Orthologs for UBBP1 Gene

Paralogs for UBBP1 Gene

No data available for Paralogs for UBBP1 Gene

Variants for UBBP1 Gene

Additional Variant Information for UBBP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBBP1 Gene

Disorders for UBBP1 Gene

Additional Disease Information for UBBP1

Genetic Association Database
(GAD)

No disorders were found for UBBP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBBP1 Gene

Publications for UBBP1 Gene

  1. Genome-wide association study of pancreatic cancer in Japanese population. (PMID: 20686608) Low SK … Sakamoto H (PloS one 2010) 41
  2. Genome-wide association of sleep and circadian phenotypes. (PMID: 17903308) Gottlieb DJ … Wilk JB (BMC medical genetics 2007) 41
  3. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S … Wolf PA (BMC medical genetics 2007) 41
  4. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 41
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 41

Products for UBBP1 Gene

Sources for UBBP1 Gene