Aliases for UBA6-AS1 Gene

Subcategory (RNA class) for UBA6-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for UBA6-AS1 Gene

  • UBA6 Antisense RNA 1 (Head To Head) 2 3 5
  • UBA6-AS1 2 168
  • HSALNG0034888 167
  • NONHSAG038086 92
  • HSALNG0034891 167
  • NONHSAG038090 92
  • NONHSAG038095 92

External Ids for UBA6-AS1 Gene

Previous GeneCards Identifiers for UBA6-AS1 Gene

  • GC04P068568

Summaries for UBA6-AS1 Gene

GeneCards Summary for UBA6-AS1 Gene

UBA6-AS1 (UBA6 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for UBA6-AS1 Gene

  • Small nucleolar RNA SNORA62/SNORA6 family

Additional gene information for UBA6-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for UBA6-AS1 Gene

Genomics for UBA6-AS1 Gene

GeneHancer (GH) Regulatory Elements for UBA6-AS1 Gene

Promoters and enhancers for UBA6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J067697 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 521.9 -0.6 -551 4.3 FOXK2 ZBTB40 ZNF217 CTCF SIN3A MYC POLR2G SP1 NCOR1 GTF2E2 UBA6 UBA6-AS1 lnc-GNRHR-4 STAP1 TMPRSS11D ENSG00000270257
GH04J067720 Enhancer 1.3 Ensembl ENCODE dbSUPER 21.9 +21.1 21112 3.8 CTCF GTF2E2 SIX5 TEAD4 ZIC2 ZBTB11 AFF1 REST DNMT1 RFX1 ENSG00000270228 LOC100419862 lnc-GNRHR-2 piR-35568-004 piR-38922 piR-57734 UBA6 UBA6-AS1 GNRHR
GH04J067713 Enhancer 1.2 Ensembl ENCODE dbSUPER 21.9 +12.0 11980 4 ZNF217 CTCF ZIC2 MYC CTBP1 RBM25 NCOR1 ZNF316 MAX ZNF592 UBA6 UBA6-AS1 GNRHR STAP1 ST3GAL1P1 lnc-UBA6-1
GH04J067680 Enhancer 0.8 Ensembl ENCODE 21.6 -19.7 -19725 2.7 FOXA2 FOS FOXP1 HMG20A CEBPG ZNF644 GATAD2A RXRB FOXA1 FOXA3 UBA6 UBA6-AS1 STAP1 UGT2B15 lnc-GNRHR-4 ENSG00000270257
GH04J067632 Enhancer 0.3 Ensembl 21.4 -66.8 -66808 1.2 PRDM6 PKNOX1 UBA6 UBA6-AS1 STAP1 piR-50308-493 ENSG00000279464 lnc-UBA6-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around UBA6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UBA6-AS1 Gene

Genomic Locations for UBA6-AS1 Gene
chr4:67,701,209-68,080,952
(GRCh38/hg38)
Size:
379,744 bases
Orientation:
Plus strand
chr4:68,566,996-68,946,670
(GRCh37/hg19)
Size:
379,675 bases
Orientation:
Plus strand

Genomic View for UBA6-AS1 Gene

Genes around UBA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBA6-AS1 Gene

Proteins for UBA6-AS1 Gene

Post-translational modifications for UBA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBA6-AS1 Gene

Domains & Families for UBA6-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for UBA6-AS1 Gene

Function for UBA6-AS1 Gene

Phenotypes From GWAS Catalog for UBA6-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBA6-AS1 Gene

Localization for UBA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBA6-AS1 Gene

Pathways & Interactions for UBA6-AS1 Gene

PathCards logo

SuperPathways for UBA6-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for UBA6-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for UBA6-AS1 Gene

Drugs & Compounds for UBA6-AS1 Gene

No Compound Related Data Available

Transcripts for UBA6-AS1 Gene

mRNA/cDNA for UBA6-AS1 Gene

36 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
17 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
10 LncBook transcripts :
24 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for UBA6-AS1 Gene

No ASD Table

Relevant External Links for UBA6-AS1 Gene

GeneLoc Exon Structure for
UBA6-AS1

Expression for UBA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UBA6-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for UBA6-AS1

genes like me logo Genes that share expression patterns with UBA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBA6-AS1 Gene

Orthologs for UBA6-AS1 Gene

Evolution for UBA6-AS1 Gene

ENSEMBL:
Gene Tree for UBA6-AS1 (if available)
TreeFam:
Gene Tree for UBA6-AS1 (if available)

No data available for Orthologs for UBA6-AS1 Gene

Paralogs for UBA6-AS1 Gene

No data available for Paralogs for UBA6-AS1 Gene

Variants for UBA6-AS1 Gene

Additional dbSNP identifiers (rs#s) for UBA6-AS1 Gene

Additional Variant Information for UBA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBA6-AS1 Gene

Disorders for UBA6-AS1 Gene

Additional Disease Information for UBA6-AS1

No disorders were found for UBA6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBA6-AS1 Gene

Publications for UBA6-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for UBA6-AS1 Gene

Sources for UBA6-AS1 Gene