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Aliases for UBA6-AS1 Gene

Subcategory (RNA class) for UBA6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBA6-AS1 Gene

  • UBA6 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for UBA6-AS1 Gene

Previous GeneCards Identifiers for UBA6-AS1 Gene

  • GC04P068568

Summaries for UBA6-AS1 Gene

GeneCards Summary for UBA6-AS1 Gene

UBA6-AS1 (UBA6 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBA6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBA6-AS1 Gene

Genomics for UBA6-AS1 Gene

GeneHancer (GH) Regulatory Elements for UBA6-AS1 Gene

Promoters and enhancers for UBA6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I067697 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 572 -1.1 -1089 4.8 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YBX1 YY1 POLR2B UBA6 UBA6-AS1 CENPC YTHDC1 ENSG00000270257 STAP1 TMPRSS11D GC04P067653
GH04I067720 Enhancer 1.4 Ensembl ENCODE dbSUPER 21.9 +20.4 20356 2.4 PKNOX1 ARNT YY1 ZNF766 FOS REST ZNF592 MEF2D SMARCA4 HMBOX1 PIR51733 PIR61967 UBA6 UBA6-AS1 CENPC YTHDC1 ENSG00000270257 GNRHR LOC100419862 GC04P067653
GH04I067712 Enhancer 1.2 Ensembl ENCODE dbSUPER 21.9 +12.8 12794 2.2 HDAC1 PKNOX1 ATF1 THRB TCF12 ATF7 CREM SMARCA5 ELF1 ZNF592 UBA6 UBA6-AS1 GNRHR STAP1 ST3GAL1P1 GC04M067708 GC04P067653
GH04I067680 Enhancer 0.6 ENCODE 21.6 -19.8 -19794 2.7 SOX13 GATAD2A FOXA2 FOXA3 CEBPG HMG20A ZNF644 CEBPA UBA6 UBA6-AS1 STAP1 UGT2B15 GC04P067653
GH04I067724 Enhancer 0.4 ENCODE 18.8 +22.9 22880 0.2 CTCF ZNF143 LOC100419862 UBA6-AS1 GNRHR PIR51733 GC04P067653
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UBA6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UBA6-AS1 Gene

Genomic Locations for UBA6-AS1 Gene
chr4:67,701,278-68,080,952
(GRCh38/hg38)
Size:
379,675 bases
Orientation:
Plus strand
chr4:68,566,996-68,946,670
(GRCh37/hg19)

Genomic View for UBA6-AS1 Gene

Genes around UBA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBA6-AS1 Gene

Proteins for UBA6-AS1 Gene

Post-translational modifications for UBA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBA6-AS1 Gene

Domains & Families for UBA6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBA6-AS1 Gene

Function for UBA6-AS1 Gene

Phenotypes From GWAS Catalog for UBA6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBA6-AS1 Gene

Localization for UBA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBA6-AS1 Gene

Pathways & Interactions for UBA6-AS1 Gene

SuperPathways for UBA6-AS1 Gene

No Data Available

Interacting Proteins for UBA6-AS1 Gene

Gene Ontology (GO) - Biological Process for UBA6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBA6-AS1 Gene

Drugs & Compounds for UBA6-AS1 Gene

No Compound Related Data Available

Transcripts for UBA6-AS1 Gene

mRNA/cDNA for UBA6-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UBA6-AS1 Gene

No ASD Table

Relevant External Links for UBA6-AS1 Gene

GeneLoc Exon Structure for
UBA6-AS1
ECgene alternative splicing isoforms for
UBA6-AS1

Expression for UBA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBA6-AS1 Gene

genes like me logo Genes that share expression patterns with UBA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBA6-AS1 Gene

Orthologs for UBA6-AS1 Gene

Evolution for UBA6-AS1 Gene

ENSEMBL:
Gene Tree for UBA6-AS1 (if available)
TreeFam:
Gene Tree for UBA6-AS1 (if available)

No data available for Orthologs for UBA6-AS1 Gene

Paralogs for UBA6-AS1 Gene

No data available for Paralogs for UBA6-AS1 Gene

Variants for UBA6-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBA6-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000060836 -- 67,712,383(+) G/A intron_variant
rs1000082563 -- 67,711,942(+) G/A intron_variant
rs1000255205 -- 67,703,885(+) A/C intron_variant
rs1000378575 -- 67,709,796(+) AAACCATA/A intron_variant
rs1000430992 -- 67,710,190(+) C/G intron_variant

Additional Variant Information for UBA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBA6-AS1 Gene

Disorders for UBA6-AS1 Gene

Additional Disease Information for UBA6-AS1

No disorders were found for UBA6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBA6-AS1 Gene

Publications for UBA6-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for UBA6-AS1 Gene

Sources for UBA6-AS1 Gene

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