Aliases for TVP23CP2 Gene

Aliases for TVP23CP2 Gene

  • TVP23C Pseudogene 2 2 3 5
  • Trans-Golgi Network Vesicle Protein 23 Homolog C (S. Cerevisiae) Pseudogene 2 2
  • Trans-Golgi Network Vesicle Protein 23 Homolog C Pseudogene 2 3
  • Family With Sequence Similarity 18, Member B1 Pseudogene 3
  • Family With Sequence Similarity 18, Member B2 Pseudogene 3
  • CGI-148P 3
  • TVP23CP2 5

External Ids for TVP23CP2 Gene

Previous GeneCards Identifiers for TVP23CP2 Gene

  • GC16P014298

Summaries for TVP23CP2 Gene

GeneCards Summary for TVP23CP2 Gene

TVP23CP2 (TVP23C Pseudogene 2) is a Pseudogene.

Additional gene information for TVP23CP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TVP23CP2 Gene

Genomics for TVP23CP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TVP23CP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014200 Promoter 0.3 EPDnew 600.7 0.0 -39 0.1 ENSG00000262529 NONHSAG018666.2 TVP23CP2 MRTFB PARN
GH16J014202 Enhancer 0.8 Ensembl ENCODE 0.7 +3.0 3049 1.6 CTCF FOXA1 SOX13 ZBTB20 ARID3A FOXA2 OSR2 CUX1 FOXP1 GATA3 RF00066-071 NONHSAG018666.2 TVP23CP2 MRTFB PARN
GH16J014203 Enhancer 0.3 Ensembl 0.7 +2.0 2044 0.4 CTCF YY1 NONHSAG018666.2 RF00066-071 TVP23CP2 MRTFB PARN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TVP23CP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TVP23CP2 Gene

Genomic Locations for TVP23CP2 Gene
chr16:14,200,357-14,202,119
(GRCh38/hg38)
Size:
1,763 bases
Orientation:
Plus strand
chr16:14,294,189-14,295,976
(GRCh37/hg19)
Size:
1,788 bases
Orientation:
Plus strand

Genomic View for TVP23CP2 Gene

Genes around TVP23CP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TVP23CP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TVP23CP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TVP23CP2 Gene

Proteins for TVP23CP2 Gene

Post-translational modifications for TVP23CP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TVP23CP2 Gene

Domains & Families for TVP23CP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TVP23CP2 Gene

Function for TVP23CP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TVP23CP2 Gene

Localization for TVP23CP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TVP23CP2 Gene

Pathways & Interactions for TVP23CP2 Gene

PathCards logo

SuperPathways for TVP23CP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TVP23CP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TVP23CP2 Gene

Drugs & Compounds for TVP23CP2 Gene

No Compound Related Data Available

Transcripts for TVP23CP2 Gene

mRNA/cDNA for TVP23CP2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TVP23CP2 Gene

No ASD Table

Relevant External Links for TVP23CP2 Gene

GeneLoc Exon Structure for
TVP23CP2

Expression for TVP23CP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TVP23CP2 Gene

mRNA differential expression in normal tissues according to GTEx for TVP23CP2 Gene

This gene is overexpressed in Cervix - Endocervix (x5.2).
genes like me logo Genes that share expression patterns with TVP23CP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TVP23CP2 Gene

Orthologs for TVP23CP2 Gene

Evolution for TVP23CP2 Gene

ENSEMBL:
Gene Tree for TVP23CP2 (if available)
TreeFam:
Gene Tree for TVP23CP2 (if available)

No data available for Orthologs for TVP23CP2 Gene

Paralogs for TVP23CP2 Gene

No data available for Paralogs for TVP23CP2 Gene

Variants for TVP23CP2 Gene

Additional Variant Information for TVP23CP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TVP23CP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TVP23CP2 Gene

Disorders for TVP23CP2 Gene

No disorders were found for TVP23CP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TVP23CP2 Gene

Publications for TVP23CP2 Gene

  1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M … Tokunaga K (Human genetics 2010) 3
  2. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus BJ … Adams MD (Genomics 1999) 3

No data available for Mastermind for TVP23CP2 Gene

Products for TVP23CP2 Gene

Sources for TVP23CP2 Gene