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TVP23A Gene(Protein Coding)

Trans-Golgi Network Vesicle Protein 23 Homolog A

GCID:
GC16M010856
GIFtS:
37
Genes Participants
UDN Logo

Aliases for TVP23A Gene

Aliases for TVP23A Gene

  • Trans-Golgi Network Vesicle Protein 23 Homolog A 2 3 5
  • Family With Sequence Similarity 18, Member A 2 3
  • FAM18A 3 4
  • Trans-Golgi Network Vesicle Protein 23 Homolog A (S. Cerevisiae) 2
  • Golgi Apparatus Membrane Protein TVP23 Homolog A 3
  • Protein FAM18A 3
  • YDR084C 3

External Ids for TVP23A Gene

Previous HGNC Symbols for TVP23A Gene

  • FAM18A

Previous GeneCards Identifiers for TVP23A Gene

  • GC16M010864
  • GC16M010873

Summaries for TVP23A Gene

Entrez Gene Summary for TVP23A Gene

  • This gene encodes a membrane protein associated with the Golgi apparatus, which plays a crucial role in intracellular vesicular transport. The encoded protein is likely associated with the late (trans) Golgi compartments, which are involved in the delivery of secretory and membrane proteins to the endosome, lysosome or the plasma membrane. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]

GeneCards Summary for TVP23A Gene

TVP23A (Trans-Golgi Network Vesicle Protein 23 Homolog A) is a Protein Coding gene. An important paralog of this gene is TVP23B.

Additional gene information for TVP23A Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TVP23A Gene

Genomics for TVP23A Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for TVP23A Gene

Promoters and enhancers for TVP23A Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I010819 Promoter/Enhancer 0.8 Ensembl ENCODE 550.8 +0.4 352 0.2 EZH2 TVP23A PIR44837 GC16P010485
GH16I010818 Promoter 0.8 EPDnew 550.8 +0.0 45 0.1 EGR1 CBFA2T3 CBFA2T2 CREM EZH2 TVP23A PIR44837 GC16P010485
GH16I011580 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 -765.5 -765477 7.7 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B LITAF TVP23A TXNDC11 SNN ZC3H7A SNX29 SOCS1 LOC400499
GH16I010842 Enhancer 1.1 FANTOM5 Ensembl ENCODE 13.7 -24.6 -24584 1.1 EBF1 KLF5 IRF4 RELA POLR2A BCLAF1 IKZF2 RUNX3 ZNF687 NR2F1 LOC729945 CIITA TVP23A SOCS1 NUBP1 LOC105371080 GC16P010485
GH16I010846 Enhancer 0.8 FANTOM5 Ensembl ENCODE 12.4 -28.3 -28342 1.6 RNF2 BMI1 TVP23A SOCS1 NUBP1 CIITA LOC729945 LOC105371080 GC16P010485
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TVP23A on UCSC Golden Path with GeneCards custom track

Genomic Locations for TVP23A Gene

Genomic Locations for TVP23A Gene
chr16:10,760,919-10,818,859
(GRCh38/hg38)
Size:
57,941 bases
Orientation:
Minus strand
chr16:10,854,776-10,912,651
(GRCh37/hg19)

Genomic View for TVP23A Gene

Genes around TVP23A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TVP23A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TVP23A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TVP23A Gene

Proteins for TVP23A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for TVP23A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NH52-TV23A_HUMAN
    Recommended name:
    Golgi apparatus membrane protein TVP23 homolog A
    Protein Accession:
    A6NH52
    Secondary Accessions:
    • B2RUV4
    • B7ZW18

    Protein attributes for TVP23A Gene

    Size:
    213 amino acids
    Molecular mass:
    24111 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TVP23A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TVP23A Gene

Protein Expression for TVP23A Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for TVP23A Gene

No Post-translational modifications

Other Protein References for TVP23A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TVP23A Gene

Domains & Families for TVP23A Gene

Gene Families for TVP23A Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for TVP23A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TVP23A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NH52

UniProtKB/Swiss-Prot:

TV23A_HUMAN :
  • Belongs to the TVP23 family.
Family:
  • Belongs to the TVP23 family.
genes like me logo Genes that share domains with TVP23A: view

Function for TVP23A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
genes like me logo Genes that share phenotypes with TVP23A: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TVP23A Gene

Localization for TVP23A Gene

Subcellular locations from UniProtKB/Swiss-Prot for TVP23A Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TVP23A gene
Compartment Confidence
plasma membrane 3
golgi apparatus 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TVP23A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0030173 integral component of Golgi membrane IBA --
genes like me logo Genes that share ontologies with TVP23A: view

Pathways & Interactions for TVP23A Gene

SuperPathways for TVP23A Gene

PathCards logo More details on SuperPathways for TVP23A
No Data Available

Interacting Proteins for TVP23A Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000299866%0d%0a9606.ENSP00000290299%0d%0a9606.ENSP00000349142%0d%0a9606.ENSP00000282050%0d%0a9606.ENSP00000262030%0d%0a9606.ENSP00000215375%0d%0a
Selected Interacting proteins: ENSP00000299866 A6NH52-TV23A_HUMAN for TVP23A Gene via STRING IID

Gene Ontology (GO) - Biological Process for TVP23A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009306 protein secretion IBA --
GO:0016192 vesicle-mediated transport IBA --
genes like me logo Genes that share ontologies with TVP23A: view

No data available for Pathways by source and SIGNOR curated interactions for TVP23A Gene

Drugs & Compounds for TVP23A Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TVP23A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TVP23A Gene

(7) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TVP23A Gene

Trans-golgi network vesicle protein 23 homolog A (S. cerevisiae):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TVP23A Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b
SP1: - -
SP2: - - - -
SP3: -
SP4: - -
SP5:

Relevant External Links for TVP23A Gene

GeneLoc Exon Structure for
TVP23A
ECgene alternative splicing isoforms for
TVP23A

Expression for TVP23A Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TVP23A Gene

mRNA expression in normal human tissues for TVP23A Gene
mRNA expression by GTEx for TVP23A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TVP23A Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TVP23A Gene



Protein tissue co-expression partners for TVP23A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TVP23A Gene:

TVP23A

SOURCE GeneReport for Unigene cluster for TVP23A Gene:

Hs.371576

Evidence on tissue expression from TISSUES for TVP23A Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with TVP23A: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TVP23A Gene

Orthologs for TVP23A Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TVP23A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia TVP23A 33 34
  • 99.22 (n)
cow
(Bos Taurus)
 Mammalia TVP23A 33 34
  • 88.89 (n)
dog
(Canis familiaris)
 Mammalia TVP23A 33 34
  • 87.64 (n)
mouse
(Mus musculus)
 Mammalia Tvp23a 33 16 34
  • 84.98 (n)
rat
(Rattus norvegicus)
 Mammalia Tvp23a 33
  • 84.19 (n)
oppossum
(Monodelphis domestica)
 Mammalia TVP23A 34
  • 80 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 34
  • 72 (a)
 OneToMany
-- 34
  • 67 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves FAM18A 33
  • 73.01 (n)
TVP23A 34
  • 65 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia tvp23a 33
  • 73.12 (n)
fruit fly
(Drosophila melanogaster)
 Insecta CG5021 33 34
  • 57.26 (n)
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP012432 33
  • 55.69 (n)
worm
(Caenorhabditis elegans)
 Secernentea C34D4.4 34
  • 26 (a)
 OneToMany
K. lactis yeast
(Kluyveromyces lactis)
 Saccharomycetes KLLA0C11869g 33
  • 45 (n)
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes TVP23 33 34
  • 44 (n)
A. gosspyii yeast
(Ashbya gossypii)
 Saccharomycetes AGOS_AGR153C 33
  • 43.36 (n)
thale cress
(Arabidopsis thaliana)
 eudicotyledons AT1G09330 33
  • 48.37 (n)
rice
(Oryza sativa)
 Liliopsida Os01g0331900 33
  • 46.91 (n)
bread mold
(Neurospora crassa)
 Ascomycetes NCU02733 33
  • 53.94 (n)
fission yeast
(Schizosaccharomyces pombe)
 Schizosaccharomycetes tvp23 33
  • 47 (n)
sea squirt
(Ciona savignyi)
 Ascidiacea CSA.4306 34
  • 46 (a)
 OneToMany
Species where no ortholog for TVP23A was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for TVP23A Gene

ENSEMBL:
Gene Tree for TVP23A (if available)
TreeFam:
Gene Tree for TVP23A (if available)

Paralogs for TVP23A Gene

Paralogs for TVP23A Gene

(3) SIMAP similar genes for TVP23A Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for TVP23A Gene

genes like me logo Genes that share paralogs with TVP23A: view

Variants for TVP23A Gene

Sequence variations from dbSNP and Humsavar for TVP23A Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000001403 -- 10,817,706(-) G/A intron_variant
rs1000004819 -- 10,784,702(-) C/T intron_variant
rs1000007251 -- 10,809,774(-) C/T intron_variant
rs1000036157 -- 10,795,326(-) C/T intron_variant
rs1000043470 -- 10,762,721(-) A/G genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TVP23A Gene

Variant ID Type Subtype PubMed ID
nsv833140 CNV loss 17160897
nsv1071264 CNV deletion 25765185
nsv1040428 CNV gain 25217958
esv3637915 CNV loss 21293372
esv2763131 CNV loss 21179565
esv2713976 CNV deletion 23290073
esv2678178 CNV deletion 23128226
esv2204919 CNV deletion 18987734

Variation tolerance for TVP23A Gene

Residual Variation Intolerance Score: 65.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.45; 28.42% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TVP23A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TVP23A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TVP23A Gene

Disorders for TVP23A Gene

Additional Disease Information for TVP23A

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TVP23A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TVP23A Gene

Publications for TVP23A Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 58

Products for TVP23A Gene

Sources for TVP23A Gene

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