TUBBP9 Gene (Pseudogene)

Tubulin Beta Class I Pseudogene 9

GC06P043406
GIFtS:
9

Aliases for TUBBP9 Gene

Aliases for TUBBP9 Gene

  • Tubulin Beta Class I Pseudogene 9 2 3 5
  • Tubulin, Beta Class I Pseudogene 9 2

External Ids for TUBBP9 Gene

Previous GeneCards Identifiers for TUBBP9 Gene

  • GC06P039963
  • GC06P042876
  • GC06P043215
  • GC06P039992
  • GC06P042596

Summaries for TUBBP9 Gene

GeneCards Summary for TUBBP9 Gene

TUBBP9 (Tubulin Beta Class I Pseudogene 9) is a Pseudogene.

Additional gene information for TUBBP9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TUBBP9 Gene

Genomics for TUBBP9 Gene

GeneHancer (GH) Regulatory Elements for TUBBP9 Gene

Promoters and enhancers for TUBBP9 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J039931 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.2 -1194 3.2 SIX5 MLX RBPJ NR2F1 NR2F6 HCFC1 MIXL1 NFYC ZNF121 ELF3 HSALNG0049933 LOC102723789 MOCS1 TUBBP9 ANKRD18EP DAAM2-AS1
GH06J039939 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.6 +4.2 4206 1.6 ELF1 HLF L3MBTL2 ZKSCAN8 SP1 BACH1 ZSCAN21 ZNF639 IKZF1 CAVIN1 HSALNG0049933 LOC102723789 TUBBP9 lnc-DAAM2-1
GH06J039945 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +12.9 12866 4.4 NR2F1 NR2F6 CREB1 RAD21 SP1 CEBPG CBFA2T2 CEBPA RXRA PRDM10 lnc-DAAM2-1 DAAM2-AS1 TUBBP9 HSALNG0049933 LOC102723789
GH06J039937 Enhancer 0.5 Ensembl 0.6 +3.1 3106 0.2 ZNF316 MAFG WT1 MAFK EMSY HSALNG0049933 LOC102723789 TUBBP9 lnc-DAAM2-1
GH06J039982 Enhancer 0.9 FANTOM5 Ensembl 0.2 +46.6 46606 1.2 CTCF ZNF362 CC2D1A RAD21 ZNF148 ZNF384 CEBPG ZNF639 CEBPA REST MOCS1 DAAM2 RPL23P6 lnc-DAAM2-4 TUBBP9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TUBBP9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TUBBP9 Gene

Genomic Locations for TUBBP9 Gene
chr6:39,934,595-40,000,527
(GRCh38/hg38)
Size:
65,933 bases
Orientation:
Plus strand
chr6:39,960,554-39,967,972
(GRCh37/hg19)
Size:
7,419 bases
Orientation:
Plus strand

Genomic View for TUBBP9 Gene

Genes around TUBBP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUBBP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUBBP9 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TUBBP9 Gene

Proteins for TUBBP9 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TUBBP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBBP9 Gene

Domains & Families for TUBBP9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TUBBP9 Gene

Function for TUBBP9 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TUBBP9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUBBP9 Gene

Localization for TUBBP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TUBBP9 Gene

Pathways & Interactions for TUBBP9 Gene

PathCards logo

SuperPathways for TUBBP9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TUBBP9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUBBP9 Gene

Drugs & Compounds for TUBBP9 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TUBBP9 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TUBBP9 Gene

(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TUBBP9 Gene

No ASD Table

Relevant External Links for TUBBP9 Gene

GeneLoc Exon Structure for
TUBBP9
ECgene alternative splicing isoforms for
TUBBP9

Expression for TUBBP9 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TUBBP9 Gene

mRNA expression in normal human tissues for TUBBP9 Gene
mRNA expression by GTEx for TUBBP9 Gene

mRNA differential expression in normal tissues according to GTEx for TUBBP9 Gene

This gene is overexpressed in Testis (x12.4).

NURSA nuclear receptor signaling pathways regulating expression of TUBBP9 Gene:

TUBBP9
genes like me logo Genes that share expression patterns with TUBBP9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TUBBP9 Gene

Orthologs for TUBBP9 Gene

Evolution for TUBBP9 Gene

ENSEMBL:
Gene Tree for TUBBP9 (if available)
TreeFam:
Gene Tree for TUBBP9 (if available)

No data available for Orthologs for TUBBP9 Gene

Paralogs for TUBBP9 Gene

No data available for Paralogs for TUBBP9 Gene

Variants for TUBBP9 Gene

Additional Variant Information for TUBBP9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUBBP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TUBBP9 Gene

Disorders for TUBBP9 Gene

No disorders were found for TUBBP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TUBBP9 Gene

Publications for TUBBP9 Gene

No publications were found for TUBBP9 Gene.

ExternalLinks

View latest publications for TUBBP9 gene in Mastermind

Products for TUBBP9 Gene

Sources for TUBBP9 Gene