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Aliases for TUBA3FP Gene

Aliases for TUBA3FP Gene

  • Tubulin Alpha 3f Pseudogene 2 3 5

External Ids for TUBA3FP Gene

Previous GeneCards Identifiers for TUBA3FP Gene

  • GC22M021360
  • GC22M021366
  • GC22M021002

Summaries for TUBA3FP Gene

GeneCards Summary for TUBA3FP Gene

TUBA3FP (Tubulin Alpha 3f Pseudogene) is a Pseudogene.

Additional gene information for TUBA3FP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TUBA3FP Gene

Genomics for TUBA3FP Gene

GeneHancer (GH) Regulatory Elements for TUBA3FP Gene

Promoters and enhancers for TUBA3FP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I021013 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.5 -491 3.2 HDGF HNRNPUL1 PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A YBX1 FEZF1 P2RX6 TUBA3FP ENSG00000284130 TOP3B LZTR1 MED15 DGCR8 TRMT2A PPIL2 THAP7-AS1
GH22I020494 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 19.1 +518.4 518449 2.7 CLOCK FEZF1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 MED15 KLHL22 LOC101928824 LZTR1 DGCR8 RPL7AP70 TRMT2A RPL8P5 LOC100420177 THAP7
GH22I020961 Enhancer 1.2 Ensembl ENCODE 20.6 +52.3 52305 0.9 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A YBX1 ZNF280A ZNF213 E2F8 DGCR8 LZTR1 THAP7 PPIL2 TRMT2A THAP7-AS1 ZDHHC8 CCDC116 LOC100420177 PI4KAP2
GH22I020319 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.5 +693.9 693865 2.8 HDGF ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF213 E2F8 DGCR6L ENSG00000273343 ENSG00000273139 KLHL22 TUBA3FP THAP7-AS1 ZNF74
GH22I021981 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.7 -968.3 -968309 1.6 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 TOP3B IGLV5-52 ENSG00000234630 ENSG00000224086 PPIL2 ENSG00000272779 TUBA3FP ENSG00000225544 THAP7-AS1 ENSG00000273342
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TUBA3FP on UCSC Golden Path with GeneCards custom track

Genomic Locations for TUBA3FP Gene

Genomic Locations for TUBA3FP Gene
chr22:21,008,193-21,014,292
(GRCh38/hg38)
Size:
6,100 bases
Orientation:
Minus strand
chr22:21,357,184-21,368,581
(GRCh37/hg19)

Genomic View for TUBA3FP Gene

Genes around TUBA3FP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TUBA3FP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUBA3FP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUBA3FP Gene

Proteins for TUBA3FP Gene

Post-translational modifications for TUBA3FP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUBA3FP Gene

Domains & Families for TUBA3FP Gene

Gene Families for TUBA3FP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TUBA3FP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TUBA3FP Gene

Function for TUBA3FP Gene

Phenotypes From GWAS Catalog for TUBA3FP Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUBA3FP Gene

Localization for TUBA3FP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TUBA3FP Gene

Pathways & Interactions for TUBA3FP Gene

SuperPathways for TUBA3FP Gene

No Data Available

Interacting Proteins for TUBA3FP Gene

Gene Ontology (GO) - Biological Process for TUBA3FP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TUBA3FP Gene

Drugs & Compounds for TUBA3FP Gene

No Compound Related Data Available

Transcripts for TUBA3FP Gene

mRNA/cDNA for TUBA3FP Gene

Unigene Clusters for TUBA3FP Gene

Tubulin, alpha 3f, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TUBA3FP Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4
SP1:
SP2: -
SP3:

Relevant External Links for TUBA3FP Gene

GeneLoc Exon Structure for
TUBA3FP
ECgene alternative splicing isoforms for
TUBA3FP

Expression for TUBA3FP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TUBA3FP Gene

mRNA differential expression in normal tissues according to GTEx for TUBA3FP Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.2), Brain - Cerebellum (x6.1), and Pituitary (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of TUBA3FP Gene:

TUBA3FP

SOURCE GeneReport for Unigene cluster for TUBA3FP Gene:

Hs.585006
genes like me logo Genes that share expression patterns with TUBA3FP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TUBA3FP Gene

Orthologs for TUBA3FP Gene

Evolution for TUBA3FP Gene

ENSEMBL:
Gene Tree for TUBA3FP (if available)
TreeFam:
Gene Tree for TUBA3FP (if available)

No data available for Orthologs for TUBA3FP Gene

Paralogs for TUBA3FP Gene

No data available for Paralogs for TUBA3FP Gene

Variants for TUBA3FP Gene

Sequence variations from dbSNP and Humsavar for TUBA3FP Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000168107 -- 21,012,780(-) C/T intron_variant
rs1000227427 -- 21,009,343(-) C/T non_coding_transcript_variant
rs1000476368 -- 21,014,262(-) T/G non_coding_transcript_variant
rs1000564618 -- 21,010,512(-) G/A intron_variant
rs1002108004 -- 21,016,191(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TUBA3FP Gene

Variant ID Type Subtype PubMed ID
nsv964590 CNV duplication 23825009
nsv834142 CNV gain 17160897
nsv834141 CNV loss 17160897
nsv828962 CNV loss 20364138
nsv828961 CNV gain 20364138
nsv828960 CNV loss 20364138
nsv588306 CNV gain 21841781
nsv588305 CNV loss 21841781
nsv523162 CNV loss 19592680
nsv471185 CNV loss 18288195
nsv436864 CNV insertion 17901297
nsv3563 CNV deletion 18451855
nsv1065617 CNV gain 25217958
nsv1062280 CNV gain 25217958
nsv1056614 CNV loss 25217958
esv3893441 CNV gain+loss 25118596
esv3647308 CNV loss 21293372
esv3647307 CNV loss 21293372
esv3647305 CNV gain 21293372
esv3647304 CNV loss 21293372
esv2763693 CNV gain 21179565
esv2678175 CNV deletion 23128226
dgv7994n54 CNV gain 21841781
dgv7993n54 CNV gain 21841781
dgv4483n100 CNV gain 25217958

Additional Variant Information for TUBA3FP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUBA3FP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TUBA3FP Gene

Disorders for TUBA3FP Gene

Additional Disease Information for TUBA3FP

No disorders were found for TUBA3FP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUBA3FP Gene

Publications for TUBA3FP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  4. Protection from free beta-tubulin by the beta-tubulin binding protein Rbl2p. (PMID: 11739729) Abruzzi KC … Solomon F (Molecular and cellular biology 2002) 22 58
  5. The carboxy-terminal peptide of detyrosinated alpha tubulin provides a minimal system to study the substrate specificity of tubulin-tyrosine ligase. (PMID: 7510228) Rüdiger M … Weber K (European journal of biochemistry 1994) 22 58

Products for TUBA3FP Gene

Sources for TUBA3FP Gene

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