Aliases for TUB-AS1 Gene

Subcategory (RNA class) for TUB-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TUB-AS1 Gene

  • TUB Antisense RNA 1 2 3 5
  • TUB-AS1 2 5 165
  • NONHSAG007579.2 91
  • HSALNG0082528 164

External Ids for TUB-AS1 Gene

Summaries for TUB-AS1 Gene

GeneCards Summary for TUB-AS1 Gene

TUB-AS1 (TUB Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TUB-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TUB-AS1 Gene

Genomics for TUB-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TUB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008060 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 +1.3 1335 1.4 ZIC2 CEBPB FOS ZFHX2 BHLHE40 MAFK EGR2 NFE2L2 TUB-AS1 TUB CASC23 ENSG00000279391 lnc-RIC3-2 RIC3
GH11J008059 Enhancer 0.4 Ensembl dbSUPER 600.7 -0.2 -161 1.2 NR2F2 TUB-AS1 TUB CASC23 ENSG00000254921 RIC3
GH11J008057 Enhancer 0.3 Ensembl 600.7 -2.0 -1961 0.4 SCRT2 TUB-AS1 TUB CASC23 ENSG00000254921 RIC3
GH11J008067 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 +8.9 8939 2.6 PRDM10 ZNF512 IKZF1 JUND ZIC2 PKNOX1 SP1 ZBTB20 CTBP1 FOS TUB ENSG00000254921 CASC23 ENSG00000279391 TUB-AS1 lnc-RIC3-2 RIC3
GH11J008056 Enhancer 0.6 Ensembl 0.7 -2.9 -2908 0.9 CEBPG CEBPA CEBPB JUND NR2F2 ZFHX2 HNF4A RXRA IRF9 ATF3 TUB CASC23 TUB-AS1 ENSG00000254921 RIC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TUB-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TUB-AS1 Gene

Genomic Locations for TUB-AS1 Gene
chr11:8,059,962-8,069,374
(GRCh38/hg38)
Size:
9,413 bases
Orientation:
Plus strand
chr11:8,081,585-8,090,920
(GRCh37/hg19)
Size:
9,336 bases
Orientation:
Plus strand

Genomic View for TUB-AS1 Gene

Genes around TUB-AS1 on UCSC Golden Path with GeneCards custom track
TUB-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TUB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TUB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TUB-AS1 Gene

Proteins for TUB-AS1 Gene

Post-translational modifications for TUB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TUB-AS1 Gene

Domains & Families for TUB-AS1 Gene

Gene Families for TUB-AS1 Gene

genes like me logo Genes that share domains with TUB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TUB-AS1 Gene

Function for TUB-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TUB-AS1 Gene

Localization for TUB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TUB-AS1 Gene

Pathways & Interactions for TUB-AS1 Gene

PathCards logo

SuperPathways for TUB-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TUB-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TUB-AS1 Gene

Drugs & Compounds for TUB-AS1 Gene

No Compound Related Data Available

Transcripts for TUB-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TUB-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003B1BE5_9606 lncRNA 2021 5

HGNC: 51120,

RefSeq: NR_120537,

Ensembl: ENST00000506601 (view in UCSC) ,

LNCipedia: TUB-AS1:3,

NONCODE: NONHSAT017823.2,

URS000023CF91_9606 lncRNA 531 4

Ensembl: ENST00000530466 (view in UCSC) ,

LncBook: HSALNT0171719,

LNCipedia: TUB-AS1:2,

NONCODE: NONHSAT017824.2,

URS000075A70C_9606 lncRNA 1964 2

RefSeq: NR_120538,

LNCipedia: TUB-AS1:4,

URS00008B34CD_9606 lncRNA 544 3

LncBook: HSALNT0171718,

LNCipedia: TUB-AS1:1,

NONCODE: NONHSAT017822.2,

URS00009C0AEF_9606 lncRNA 2021 1

NONCODE: NONHSAT158795.1,

TUB-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TUB-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TUB-AS1 Gene

No ASD Table

Relevant External Links for TUB-AS1 Gene

GeneLoc Exon Structure for
TUB-AS1

Expression for TUB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TUB-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TUB-AS1

genes like me logo Genes that share expression patterns with TUB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TUB-AS1 Gene

Orthologs for TUB-AS1 Gene

Evolution for TUB-AS1 Gene

ENSEMBL:
Gene Tree for TUB-AS1 (if available)
TreeFam:
Gene Tree for TUB-AS1 (if available)

No data available for Orthologs for TUB-AS1 Gene

Paralogs for TUB-AS1 Gene

No data available for Paralogs for TUB-AS1 Gene

Variants for TUB-AS1 Gene

Additional dbSNP identifiers (rs#s) for TUB-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TUB-AS1 Gene

Variant ID Type Subtype PubMed ID
esv25122 CNV loss 19812545
nsv428249 CNV loss 18775914
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

Additional Variant Information for TUB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TUB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TUB-AS1 Gene

Disorders for TUB-AS1 Gene

Additional Disease Information for TUB-AS1

No disorders were found for TUB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TUB-AS1 Gene

Publications for TUB-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for TUB-AS1 Gene

Sources for TUB-AS1 Gene