Aliases for TTLL7-IT1 Gene

Subcategory (RNA class) for TTLL7-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TTLL7-IT1 Gene

  • TTLL7 Intronic Transcript 1 2 3 5
  • TTLL7-IT1 2 5 165
  • TTLL7 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG001938.2 91
  • HSALNG0004786 164

External Ids for TTLL7-IT1 Gene

Previous GeneCards Identifiers for TTLL7-IT1 Gene

  • GC00U933215
  • GC01M084445

Summaries for TTLL7-IT1 Gene

GeneCards Summary for TTLL7-IT1 Gene

TTLL7-IT1 (TTLL7 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TTLL7-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TTLL7-IT1 Gene

Genomics for TTLL7-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TTLL7-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J083956 Enhancer 0.6 dbSUPER 0.4 +21.6 21631 12.5 CEBPG ATF7 PRDM1 CEBPB NFE2 CREB1 ATF2 MAFG ATF4 JUND TTLL7 lnc-GNG5-6 TTLL7-IT1
GH01J083954 Enhancer 0.5 Ensembl dbSUPER 0.3 +29.9 29900 0.8 NFE2 MAFG TTLL7 lnc-GNG5-6 TTLL7-IT1
GH01J083974 Enhancer 0.3 dbSUPER 0.4 +8.9 8903 1.2 ZSCAN4 POLR2A LINC01725 TTLL7 TTLL7-IT1 lnc-GNG5-6
GH01J083953 Promoter/Enhancer 0.5 EPDnew dbSUPER 0.3 +32.0 31979 0.1 lnc-GNG5-6 TTLL7 TTLL7-IT1
GH01J083969 Enhancer 0.3 Ensembl dbSUPER 0.4 +13.3 13300 0.8 TTLL7 TTLL7-IT1 lnc-GNG5-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TTLL7-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TTLL7-IT1 Gene

Genomic Locations for TTLL7-IT1 Gene
chr1:83,979,118-83,984,301
(GRCh38/hg38)
Size:
5,184 bases
Orientation:
Minus strand
chr1:84,444,801-84,449,983
(GRCh37/hg19)
Size:
5,183 bases
Orientation:
Minus strand

Genomic View for TTLL7-IT1 Gene

Genes around TTLL7-IT1 on UCSC Golden Path with GeneCards custom track
TTLL7-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TTLL7-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTLL7-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TTLL7-IT1 Gene

Proteins for TTLL7-IT1 Gene

Post-translational modifications for TTLL7-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTLL7-IT1 Gene

Domains & Families for TTLL7-IT1 Gene

Gene Families for TTLL7-IT1 Gene

genes like me logo Genes that share domains with TTLL7-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TTLL7-IT1 Gene

Function for TTLL7-IT1 Gene

Phenotypes From GWAS Catalog for TTLL7-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTLL7-IT1 Gene

Localization for TTLL7-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTLL7-IT1 Gene

Pathways & Interactions for TTLL7-IT1 Gene

PathCards logo

SuperPathways for TTLL7-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TTLL7-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TTLL7-IT1 Gene

Drugs & Compounds for TTLL7-IT1 Gene

No Compound Related Data Available

Transcripts for TTLL7-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TTLL7-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A36D3_9606 lncRNA 2921 5

HGNC: 41486,

Ensembl: ENST00000455929 (view in UCSC) ,

LncBook: HSALNT0009666,

LNCipedia: TTLL7-IT1:1,

NONCODE: NONHSAT004181.2,

URS00009AFE44_9606 lncRNA 2921 2

LncBook: HSALNT0009667,

NONCODE: NONHSAT151836.1,

TTLL7-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TTLL7-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TTLL7-IT1 Gene

No ASD Table

Relevant External Links for TTLL7-IT1 Gene

GeneLoc Exon Structure for
TTLL7-IT1

Expression for TTLL7-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTLL7-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for TTLL7-IT1 Gene

This gene is overexpressed in Testis (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TTLL7-IT1

genes like me logo Genes that share expression patterns with TTLL7-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTLL7-IT1 Gene

Orthologs for TTLL7-IT1 Gene

Evolution for TTLL7-IT1 Gene

ENSEMBL:
Gene Tree for TTLL7-IT1 (if available)
TreeFam:
Gene Tree for TTLL7-IT1 (if available)

No data available for Orthologs for TTLL7-IT1 Gene

Paralogs for TTLL7-IT1 Gene

No data available for Paralogs for TTLL7-IT1 Gene

Variants for TTLL7-IT1 Gene

Additional Variant Information for TTLL7-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTLL7-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTLL7-IT1 Gene

Disorders for TTLL7-IT1 Gene

No disorders were found for TTLL7-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTLL7-IT1 Gene

Publications for TTLL7-IT1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for TTLL7-IT1 Gene

Products for TTLL7-IT1 Gene

Sources for TTLL7-IT1 Gene