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Aliases for TTC41P Gene

Aliases for TTC41P Gene

  • Tetratricopeptide Repeat Domain 41, Pseudogene 2 3 5
  • GNN 3 4
  • Putative Tetratricopeptide Repeat Protein 41 4
  • Grp94 Neighboring Nucleotidase Pseudogene 3
  • Grp94-Neighboring Nucleotidase 4
  • TPR Repeat Protein 41 4
  • GNNP 3

External Ids for TTC41P Gene

Summaries for TTC41P Gene

GeneCards Summary for TTC41P Gene

TTC41P (Tetratricopeptide Repeat Domain 41, Pseudogene) is a Pseudogene.

Additional gene information for TTC41P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TTC41P Gene

Genomics for TTC41P Gene

GeneHancer (GH) Regulatory Elements for TTC41P Gene

Promoters and enhancers for TTC41P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J103927 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 610.9 -0.1 -137 6.4 ZFX SP1 CC2D1A ELF3 MNT SIX5 ZNF148 NKRF POLR2A MLLT1 TTC41P GC12P103932 GC12P103934 HSP90B1 MIR3652 TDG RPL18AP3 C12orf73 NT5DC3 ENSG00000257681
GH12J103955 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.4 -26.6 -26590 3.6 CC2D1A SP1 ZFX ELF3 SIX5 CBFA2T2 ZNF148 NKRF POLR2A MLLT1 C12orf73 TDG HSP90B1 TTC41P NT5DC3 GC12P103942
GH12J103905 Enhancer 1.2 FANTOM5 Ensembl ENCODE 21.1 +22.2 22165 4.5 MCM2 CREM ZBED1 IKZF1 POLR2A BACH1 ZNF512 SMAD5 ETV6 ZNF311 TTC41P NT5DC3 HSP90B1 TDG C12orf73 ENSG00000257327
GH12J103879 Enhancer 1 Ensembl ENCODE 25.3 +49.3 49257 2.1 ELF3 SP7 RELA MZF1 IKZF1 ZNF600 PRDM10 IKZF2 ZIC2 ZNF629 TTC41P HSP90B1 NT5DC3 TDG C12orf73 ENSG00000257327
GH12J103964 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -35.8 -35790 4 SP1 ZFX ELF3 MNT CBFA2T2 NKRF POLR2A MLLT1 ZNF121 GTF2F1 TDG C12orf73 NFYB TTC41P HSP90B1 GC12P104022
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TTC41P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TTC41P Gene

Genomic Locations for TTC41P Gene
chr12:103,843,749-103,930,211
(GRCh38/hg38)
Size:
86,463 bases
Orientation:
Minus strand
chr12:104,237,527-104,323,989
(GRCh37/hg19)
Size:
86,463 bases
Orientation:
Minus strand

Genomic View for TTC41P Gene

Genes around TTC41P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TTC41P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC41P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC41P Gene

Proteins for TTC41P Gene

  • Protein details for TTC41P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P2S7-TTC41_HUMAN
    Recommended name:
    Putative tetratricopeptide repeat protein 41
    Protein Accession:
    Q6P2S7
    Secondary Accessions:
    • Q05DD4

    Protein attributes for TTC41P Gene

    Size:
    1318 amino acids
    Molecular mass:
    151684 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TTC41P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TTC41P Gene

Post-translational modifications for TTC41P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TTC41P Gene

Domains & Families for TTC41P Gene

Protein Domains for TTC41P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TTC41P: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TTC41P Gene

Function for TTC41P Gene

Phenotypes From GWAS Catalog for TTC41P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC41P Gene

Localization for TTC41P Gene

Subcellular locations from UniProtKB/Swiss-Prot for TTC41P Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for TTC41P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TTC41P: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for TTC41P Gene

Pathways & Interactions for TTC41P Gene

PathCards logo

SuperPathways for TTC41P Gene

No Data Available

Interacting Proteins for TTC41P Gene

Gene Ontology (GO) - Biological Process for TTC41P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TTC41P Gene

Drugs & Compounds for TTC41P Gene

No Compound Related Data Available

Transcripts for TTC41P Gene

mRNA/cDNA for TTC41P Gene

(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TTC41P Gene

No ASD Table

Relevant External Links for TTC41P Gene

GeneLoc Exon Structure for
TTC41P
ECgene alternative splicing isoforms for
TTC41P

Expression for TTC41P Gene

NURSA nuclear receptor signaling pathways regulating expression of TTC41P Gene:

TTC41P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC41P Gene

Orthologs for TTC41P Gene

Evolution for TTC41P Gene

ENSEMBL:
Gene Tree for TTC41P (if available)
TreeFam:
Gene Tree for TTC41P (if available)

No data available for Orthologs for TTC41P Gene

Paralogs for TTC41P Gene

No data available for Paralogs for TTC41P Gene

Variants for TTC41P Gene

Sequence variations from dbSNP and Humsavar for TTC41P Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000000192 -- 103,875,872(-) A/C/G intron_variant
rs1000010596 -- 103,896,698(-) G/A intron_variant
rs1000051526 -- 103,846,561(-) T/C intron_variant
rs1000053812 -- 103,885,845(-) G/A intron_variant
rs1000068012 -- 103,856,543(-) G/A intron_variant

Additional Variant Information for TTC41P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC41P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC41P Gene

Disorders for TTC41P Gene

Additional Disease Information for TTC41P

No disorders were found for TTC41P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC41P Gene

Publications for TTC41P Gene

  1. A census of human soluble protein complexes. (PMID: 22939629) Havugimana PC … Emili A (Cell 2012) 3 58
  2. Two-marker association tests yield new disease associations for coronary artery disease and hypertension. (PMID: 21626137) Slavin TP … Elston RC (Human genetics 2011) 3 58
  3. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 4 58
  4. The common viral insertion site Evi12 is located in the 5'-noncoding region of Gnn, a novel gene with enhanced expression in two subclasses of human acute myeloid leukemia. (PMID: 15827139) van den Akker E … Delwel R (Journal of virology 2005) 3 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for TTC41P Gene

Sources for TTC41P Gene

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