Aliases for TTC36-AS1 Gene

Data sources for TTC36-AS1 Gene:

RNA type for TTC36-AS1 Gene

lncRNA

Aliases for TTC36-AS1 Gene

External Ids for TTC36-AS1 Gene

Summaries for TTC36-AS1 Gene

GeneCards Summary for TTC36-AS1 Gene

TTC36-AS1 (TTC36 And KMT2A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TTC36-AS1 include Wiedemann-Steiner Syndrome.

Additional gene information for TTC36-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TTC36-AS1 Gene

Genomics for TTC36-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TTC36-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TTC36-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TTC36-AS1 Gene

Latest Assembly
chr11:118,510,273-118,531,141
(GRCh38/hg38)
Size:
20,869 bases
Orientation:
Minus strand

Previous Assembly
chr11:118,382,633-118,401,809
(GRCh37/hg19 by Entrez Gene)
Size:
19,177 bases
Orientation:
Minus strand

chr11:118,382,626-118,401,809
(GRCh37/hg19 by Ensembl)
Size:
19,184 bases
Orientation:
Minus strand

Genomic View for TTC36-AS1 Gene

Genes around TTC36-AS1 on UCSC Golden Path with GeneCards custom track
TTC36-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TTC36-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC36-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC36-AS1 Gene

Proteins for TTC36-AS1 Gene

Post-translational modifications for TTC36-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC36-AS1 Gene

Domains & Families for TTC36-AS1 Gene

Gene Families for TTC36-AS1 Gene

genes like me logo Genes that share domains with TTC36-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TTC36-AS1 Gene

Function for TTC36-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC36-AS1 Gene

Localization for TTC36-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTC36-AS1 Gene

Pathways & Interactions for TTC36-AS1 Gene

PathCards logo

SuperPathways for TTC36-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TTC36-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TTC36-AS1 Gene

Drugs & Compounds for TTC36-AS1 Gene

No Compound Related Data Available

Transcripts for TTC36-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TTC36-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004A4D6C_9606 lncRNA 579 3

Ensembl: ENST00000554407 (view in UCSC) ,

LNCipedia: lnc-IFT46-1:2,

NONCODE: NONHSAT024487.2,

URS000048DB64_9606 lncRNA 448 3

Ensembl: ENST00000525992 (view in UCSC) ,

LNCipedia: lnc-IFT46-1:4,

NONCODE: NONHSAT024486.2,

URS00002BEE51_9606 lncRNA 427 3

Ensembl: ENST00000528578 (view in UCSC) ,

LNCipedia: lnc-IFT46-1:5,

NONCODE: NONHSAT024488.2,

URS0000066D44_9606 lncRNA 237 3

Ensembl: ENST00000556583 (view in UCSC) ,

LNCipedia: lnc-IFT46-1:1,

NONCODE: NONHSAT024489.2,

URS000075CAD3_9606 lncRNA 653 2

RefSeq: NR_120575,

LNCipedia: lnc-IFT46-1:24,

TTC36-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TTC36-AS1 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TTC36-AS1 Gene

No ASD Table

Relevant External Links for TTC36-AS1 Gene

GeneLoc Exon Structure for
TTC36-AS1

Expression for TTC36-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC36-AS1 Gene

Orthologs for TTC36-AS1 Gene

Evolution for TTC36-AS1 Gene

ENSEMBL:
Gene Tree for TTC36-AS1 (if available)
TreeFam:
Gene Tree for TTC36-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TTC36-AS1

No data available for Orthologs for TTC36-AS1 Gene

Paralogs for TTC36-AS1 Gene

No data available for Paralogs for TTC36-AS1 Gene

Variants for TTC36-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TTC36-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
981800 Pathogenic: Wiedemann-Steiner syndrome 118,520,019(-) AC/A
NM_001197104.2(KMT2A):c.11388del (p.Asn3797fs)
FRAMESHIFT
rs1057520053 Pathogenic: not provided 118,519,701(-) C/T
NM_001197104.1(KMT2A):c.11230C>T (p.Arg3744Ter)
NONSENSE
rs1131691648 Pathogenic: not provided 118,519,616(-) A/G
NM_001197104.1(KMT2A):c.11147-2A>G
SPLICE_ACCEPTOR_VARIANT,NON_CODING_TRANSCRIPT
rs1380545356 Likely Benign: not provided 118,520,865(-) G/C
NM_001197104.2(KMT2A):c.11493G>C (p.Lys3831Asn)
MISSENSE
rs142948344 Benign: not provided 118,520,877(-) T/G
NM_001197104.2(KMT2A):c.11505T>G (p.Gly3835=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TTC36-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for TTC36-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3627872 CNV gain 21293372
nsv1044281 CNV gain 25217958
nsv513 CNV insertion 18451855
nsv819037 CNV loss 19587683

Additional Variant Information for TTC36-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC36-AS1
Leiden Open Variation Database (LOVD)
TTC36-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TTC36-AS1 Gene

Disorders for TTC36-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TTC36-AS1 Gene - From: CVR and GCD

Disorder Aliases PubMed IDs
wiedemann-steiner syndrome
  • wdsts
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TTC36-AS1

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with TTC36-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TTC36-AS1 Gene

Publications for TTC36-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for TTC36-AS1 Gene

Products for TTC36-AS1 Gene

Sources for TTC36-AS1 Gene