TTC3-AS1 Gene (RNA Gene)

TTC3 Antisense RNA 1

GC21M037187
GIFtS:
12
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Aliases for TTC3-AS1 Gene

Data sources for TTC3-AS1 Gene:

Subcategory (RNA class) for TTC3-AS1 Gene

lncRNA

Aliases for TTC3-AS1 Gene

External Ids for TTC3-AS1 Gene

Previous GeneCards Identifiers for TTC3-AS1 Gene

  • GC21M038560

Summaries for TTC3-AS1 Gene

GeneCards Summary for TTC3-AS1 Gene

TTC3-AS1 (TTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TTC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TTC3-AS1 Gene

Genomics for TTC3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TTC3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TTC3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TTC3-AS1 Gene

Latest Assembly
chr21:37,187,611-37,193,972
(GRCh38/hg38)
Size:
6,362 bases
Orientation:
Minus strand

Previous Assembly
chr21:38,559,913-38,566,227
(GRCh37/hg19 by Entrez Gene)
Size:
6,315 bases
Orientation:
Minus strand

chr21:38,559,967-38,566,227
(GRCh37/hg19 by Ensembl)
Size:
6,261 bases
Orientation:
Minus strand

Genomic View for TTC3-AS1 Gene

Genes around TTC3-AS1 on UCSC Golden Path with GeneCards custom track
TTC3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TTC3-AS1 Gene

Proteins for TTC3-AS1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for TTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC3-AS1 Gene

Domains & Families for TTC3-AS1 Gene

Gene Families for TTC3-AS1 Gene

HGNC:
genes like me logo Genes that share domains with TTC3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TTC3-AS1 Gene

Function for TTC3-AS1 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for TTC3-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC3-AS1 Gene

Localization for TTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTC3-AS1 Gene

Pathways & Interactions for TTC3-AS1 Gene

PathCards logo

SuperPathways for TTC3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TTC3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TTC3-AS1 Gene

Drugs & Compounds for TTC3-AS1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for TTC3-AS1 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TTC3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BAEC8_9606 lncRNA 1153 4

RefSeq: NR_046651,

LncBook: HSALNT0273362,

LNCipedia: TTC3-AS1:2,

NONCODE: NONHSAT082012.2,

URS000031D533_9606 lncRNA 1099 2

Ensembl: ENST00000424733 (view in UCSC) ,

LNCipedia: TTC3-AS1:1,

URS00009B24F8_9606 lncRNA 1119 2

LncBook: HSALNT0273363,

NONCODE: NONHSAT191452.1,

TTC3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TTC3-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for TTC3-AS1 Gene

No ASD Table

Relevant External Links for TTC3-AS1 Gene

GeneLoc Exon Structure for
TTC3-AS1

Expression for TTC3-AS1 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTC3-AS1 Gene

mRNA expression in normal human tissues for TTC3-AS1 Gene
mRNA expression by GTEx for TTC3-AS1 Gene
genes like me logo Genes that share expression patterns with TTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC3-AS1 Gene

Orthologs for TTC3-AS1 Gene

Evolution for TTC3-AS1 Gene

ENSEMBL:
Gene Tree for TTC3-AS1 (if available)
TreeFam:
Gene Tree for TTC3-AS1 (if available)

No data available for Orthologs for TTC3-AS1 Gene

Paralogs for TTC3-AS1 Gene

No data available for Paralogs for TTC3-AS1 Gene

Variants for TTC3-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TTC3-AS1 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
rs148719957 Likely Benign: not provided 37,188,565(-) C/G
NM_001001894.2(TTC3):c.4994C>G (p.Ala1665Gly) 		MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TTC3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC3-AS1 Gene

Disorders for TTC3-AS1 Gene

Additional Disease Information for TTC3-AS1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for TTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC3-AS1 Gene

Publications for TTC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for TTC3-AS1 gene in Mastermind

Products for TTC3-AS1 Gene

Sources for TTC3-AS1 Gene