Aliases for TTC3-AS1 Gene

Data sources for TTC3-AS1 Gene:

Subcategory (RNA class) for TTC3-AS1 Gene

lncRNA

Aliases for TTC3-AS1 Gene

External Ids for TTC3-AS1 Gene

Previous GeneCards Identifiers for TTC3-AS1 Gene

  • GC21M038560

Summaries for TTC3-AS1 Gene

GeneCards Summary for TTC3-AS1 Gene

TTC3-AS1 (TTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TTC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TTC3-AS1 Gene

Genomics for TTC3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TTC3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TTC3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TTC3-AS1 Gene

Latest Assembly
chr21:37,187,611-37,193,972
(GRCh38/hg38)
Size:
6,362 bases
Orientation:
Minus strand

Previous Assembly
chr21:38,559,913-38,566,227
(GRCh37/hg19 by Entrez Gene)
Size:
6,315 bases
Orientation:
Minus strand

chr21:38,559,967-38,566,227
(GRCh37/hg19 by Ensembl)
Size:
6,261 bases
Orientation:
Minus strand

Genomic View for TTC3-AS1 Gene

Genes around TTC3-AS1 on UCSC Golden Path with GeneCards custom track
TTC3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TTC3-AS1 Gene

Proteins for TTC3-AS1 Gene

Post-translational modifications for TTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TTC3-AS1 Gene

Domains & Families for TTC3-AS1 Gene

Gene Families for TTC3-AS1 Gene

genes like me logo Genes that share domains with TTC3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TTC3-AS1 Gene

Function for TTC3-AS1 Gene

Phenotypes From GWAS Catalog for TTC3-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TTC3-AS1 Gene

Localization for TTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TTC3-AS1 Gene

Pathways & Interactions for TTC3-AS1 Gene

PathCards logo

SuperPathways for TTC3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TTC3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TTC3-AS1 Gene

Drugs & Compounds for TTC3-AS1 Gene

No Compound Related Data Available

Transcripts for TTC3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TTC3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BAEC8_9606 lncRNA 1153 4

RefSeq: NR_046651,

LncBook: HSALNT0273362,

LNCipedia: TTC3-AS1:2,

NONCODE: NONHSAT082012.2,

URS000031D533_9606 lncRNA 1099 2

Ensembl: ENST00000424733 (view in UCSC) ,

LNCipedia: TTC3-AS1:1,

URS00009B24F8_9606 lncRNA 1119 2

LncBook: HSALNT0273363,

NONCODE: NONHSAT191452.1,

TTC3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TTC3-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TTC3-AS1 Gene

No ASD Table

Relevant External Links for TTC3-AS1 Gene

GeneLoc Exon Structure for
TTC3-AS1

Expression for TTC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TTC3-AS1 Gene

genes like me logo Genes that share expression patterns with TTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TTC3-AS1 Gene

Orthologs for TTC3-AS1 Gene

Evolution for TTC3-AS1 Gene

ENSEMBL:
Gene Tree for TTC3-AS1 (if available)
TreeFam:
Gene Tree for TTC3-AS1 (if available)

No data available for Orthologs for TTC3-AS1 Gene

Paralogs for TTC3-AS1 Gene

No data available for Paralogs for TTC3-AS1 Gene

Variants for TTC3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TTC3-AS1 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
rs148719957 Likely Benign: not provided 37,188,565(-) C/G
NM_001001894.2(TTC3):c.4994C>G (p.Ala1665Gly)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TTC3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TTC3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TTC3-AS1 Gene

Disorders for TTC3-AS1 Gene

Additional Disease Information for TTC3-AS1

No disorders were found for TTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TTC3-AS1 Gene

Publications for TTC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for TTC3-AS1 Gene

Sources for TTC3-AS1 Gene