TSTD3 Gene (Protein Coding)

Thiosulfate Sulfurtransferase Like Domain Containing 3

GC06P099426
GIFtS:
20
See more...

Aliases for TSTD3 Gene

Aliases for TSTD3 Gene

  • Thiosulfate Sulfurtransferase Like Domain Containing 3 2 3 5
  • Thiosulfate Sulfurtransferase/Rhodanese-Like Domain-Containing Protein 3 3 4
  • Thiosulfate Sulfurtransferase (Rhodanese)-Like Domain Containing 3 2 3
  • Rhodanese Domain-Containing Protein 3 3 4
  • TSTD3 5

External Ids for TSTD3 Gene

Previous GeneCards Identifiers for TSTD3 Gene

  • GC06P099969
  • GC06P099520

Summaries for TSTD3 Gene

GeneCards Summary for TSTD3 Gene

TSTD3 (Thiosulfate Sulfurtransferase Like Domain Containing 3) is a Protein Coding gene. Diseases associated with TSTD3 include Leber Congenital Amaurosis 19 and Pancreatic Adenosquamous Carcinoma.

Additional gene information for TSTD3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TSTD3 Gene

Genomics for TSTD3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TSTD3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSTD3 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for TSTD3

Genomic Locations for TSTD3 Gene

Genomic Locations for TSTD3 Gene
chr6:99,425,442-99,589,899
(GRCh38/hg38)
Size:
164,458 bases
Orientation:
Plus strand
chr6:99,968,569-99,981,061
(GRCh37/hg19)
Size:
12,493 bases
Orientation:
Plus strand

Genomic View for TSTD3 Gene

Genes around TSTD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSTD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSTD3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TSTD3 Gene

Proteins for TSTD3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for TSTD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H0UI37-TSTD3_HUMAN
    Recommended name:
    Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3
    Protein Accession:
    H0UI37

    Protein attributes for TSTD3 Gene

    Size:
    97 amino acids
    Molecular mass:
    11268 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSTD3 Gene

Post-translational modifications for TSTD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TSTD3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TSTD3 Gene

Domains & Families for TSTD3 Gene

Gene Families for TSTD3 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TSTD3 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with TSTD3: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSTD3 Gene

Function for TSTD3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TSTD3 Gene

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TSTD3

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TSTD3 Gene

Localization for TSTD3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSTD3 Gene

Pathways & Interactions for TSTD3 Gene

PathCards logo

SuperPathways for TSTD3 Gene

No Data Available

Interacting Proteins for TSTD3 Gene

Gene Ontology (GO) - Biological Process for TSTD3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSTD3 Gene

Drugs & Compounds for TSTD3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TSTD3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TSTD3 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TSTD3

Alternative Splicing Database (ASD) splice patterns (SP) for TSTD3 Gene

No ASD Table

Relevant External Links for TSTD3 Gene

GeneLoc Exon Structure for
TSTD3

Expression for TSTD3 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSTD3 Gene

mRNA expression in normal human tissues for TSTD3 Gene
mRNA expression by GTEx for TSTD3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TSTD3

SOURCE GeneReport for Unigene cluster for TSTD3 Gene:

Hs.634506
genes like me logo Genes that share expression patterns with TSTD3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSTD3 Gene

Orthologs for TSTD3 Gene

Evolution for TSTD3 Gene

ENSEMBL:
Gene Tree for TSTD3 (if available)
TreeFam:
Gene Tree for TSTD3 (if available)

No data available for Orthologs for TSTD3 Gene

Paralogs for TSTD3 Gene

No data available for Paralogs for TSTD3 Gene

Variants for TSTD3 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TSTD3 Gene

SNP ID Clinical significance and condition Chr 06 pos Variation AA Info Type
638072 Pathogenic: LEBER CONGENITAL AMAUROSIS 19 99,468,617(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT
638073 Uncertain Significance: not provided 99,446,136(+) T/A NONSENSE,NON_CODING_TRANSCRIPT_VARIANT
742059 Benign: not provided 99,445,900(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
770177 Benign: not provided 99,482,751(+) A/G SPLICE_DONOR_VARIANT,MISSENSE_VARIANT
776142 Benign: not provided 99,464,718(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for TSTD3 Gene

Structural Variations from Database of Genomic Variants (DGV) for TSTD3 Gene

Variant ID Type Subtype PubMed ID
dgv390n21 CNV loss 19592680
esv2672910 CNV deletion 23128226
esv3610121 CNV loss 21293372
nsv1029536 CNV loss 25217958

Additional Variant Information for TSTD3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSTD3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSTD3 Gene

Disorders for TSTD3 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TSTD3 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
leber congenital amaurosis 19
  • lca19
pancreatic adenosquamous carcinoma
  • adenosquamous carcinoma of pancreas
- elite association - COSMIC cancer census association via MalaCards
Search TSTD3 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for TSTD3

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with TSTD3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TSTD3 Gene

Publications for TSTD3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4

ExternalLinks

View latest publications for TSTD3 gene in Mastermind

Products for TSTD3 Gene

Sources for TSTD3 Gene