TSPOAP1-AS1 Gene (RNA Gene)

TSPOAP1, SUPT4H1 And RNF43 Antisense RNA 1

GC17P058326
GIFtS:
11
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Aliases for TSPOAP1-AS1 Gene

Subcategory (RNA class) for TSPOAP1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TSPOAP1-AS1 Gene

  • TSPOAP1, SUPT4H1 And RNF43 Antisense RNA 1 2 3 5
  • TSPOAP1-AS1 2 5 165
  • BZRAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TSPOAP1 Antisense RNA 1 2 3
  • NONHSAG022327.2 91
  • HSALNG0117711 164
  • BZRAP1-AS1 3
  • Lnc-LPO-2 165

External Ids for TSPOAP1-AS1 Gene

Previous HGNC Symbols for TSPOAP1-AS1 Gene

  • BZRAP1-AS1

Summaries for TSPOAP1-AS1 Gene

GeneCards Summary for TSPOAP1-AS1 Gene

TSPOAP1-AS1 (TSPOAP1, SUPT4H1 And RNF43 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for TSPOAP1-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for TSPOAP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TSPOAP1-AS1 Gene

Genomics for TSPOAP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TSPOAP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J058328 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.4 +13.0 13045 21 ARHGAP35 CEBPG SP1 HNRNPL CREB1 CTCF PRDM10 ZNF512 RFX1 LEF1 TSPOAP1 MN297491 MIR4736 TSPOAP1-AS1 SRSF1 MKS1 SMG8 SUPT4H1 VEZF1 TRIM37
GH17J058323 Promoter/Enhancer 1.1 Ensembl ENCODE 600.7 +0.3 273 1.6 RFX1 PATZ1 POLR2A ZBTB20 DPF2 JUND ZXDB GATAD2B ZKSCAN1 ZBTB48 TSPOAP1-AS1 lnc-SUPT4H1-2 SUPT4H1 RNF43 TSPOAP1 MPO
GH17J058326 Promoter/Enhancer 0.9 Ensembl dbSUPER 600.7 +1.8 1829 1 POLR2A REST ZNF600 HES1 ZBTB26 ZNF444 MYC PTBP1 TARDBP CTCF TSPOAP1-AS1 lnc-SUPT4H1-2 SUPT4H1 RNF43 TSPOAP1 MPO
GH17J058324 Enhancer 0.3 CraniofacialAtlas 600.7 -0.7 -732 0.2 POLR2A TSPOAP1-AS1 lnc-SUPT4H1-2 SUPT4H1 RNF43 TSPOAP1 lnc-MPO-4 MPO
GH17J058350 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +28.5 28504 4.3 SP1 HNRNPL GATAD2A YBX1 PRDM10 TFE3 SIX5 IKZF1 NFKBIZ KDM1A SUPT4H1 SRSF1 MKS1 TSPOAP1 SMG8 RAD51C RNF43 TRIM37 SKA2 MTMR4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSPOAP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TSPOAP1-AS1 Gene

Genomic Locations for TSPOAP1-AS1 Gene
chr17:58,324,472-58,415,766
(GRCh38/hg38)
Size:
91,295 bases
Orientation:
Plus strand
chr17:56,402,811-56,493,127
(GRCh37/hg19)
Size:
90,317 bases
Orientation:
Plus strand

Genomic View for TSPOAP1-AS1 Gene

Genes around TSPOAP1-AS1 on UCSC Golden Path with GeneCards custom track
TSPOAP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TSPOAP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPOAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TSPOAP1-AS1 Gene

Proteins for TSPOAP1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TSPOAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPOAP1-AS1 Gene

Domains & Families for TSPOAP1-AS1 Gene

Gene Families for TSPOAP1-AS1 Gene

HGNC:
genes like me logo Genes that share domains with TSPOAP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSPOAP1-AS1 Gene

Function for TSPOAP1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TSPOAP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPOAP1-AS1 Gene

Localization for TSPOAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPOAP1-AS1 Gene

Pathways & Interactions for TSPOAP1-AS1 Gene

PathCards logo

SuperPathways for TSPOAP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPOAP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TSPOAP1-AS1 Gene

Drugs & Compounds for TSPOAP1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TSPOAP1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TSPOAP1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000060A690_9606 lncRNA 840 3

Ensembl: ENST00000583841 (view in UCSC) ,

LncBook: HSALNT0243150,

NONCODE: NONHSAT054954.2,

URS00005AE672_9606 lncRNA 558 3

Ensembl: ENST00000582348 (view in UCSC) ,

LNCipedia: TSPOAP1-AS1:44, TSPOAP1-AS1:45,

NONCODE: NONHSAT054955.2,

URS000075DAE9_9606 lncRNA 2483 2

HGNC: 44148,

RefSeq: NR_038410,

URS000049352C_9606 lncRNA 2337 2

Ensembl: ENST00000580022 (view in UCSC) ,

LncBook: HSALNT0243152,

URS000055EA5D_9606 lncRNA 2229 2

Ensembl: ENST00000578025 (view in UCSC) ,

LncBook: HSALNT0243142,

TSPOAP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TSPOAP1-AS1 Gene

11 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TSPOAP1-AS1 Gene

No ASD Table

Relevant External Links for TSPOAP1-AS1 Gene

GeneLoc Exon Structure for
TSPOAP1-AS1

Expression for TSPOAP1-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TSPOAP1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPOAP1-AS1 Gene

Orthologs for TSPOAP1-AS1 Gene

Evolution for TSPOAP1-AS1 Gene

ENSEMBL:
Gene Tree for TSPOAP1-AS1 (if available)
TreeFam:
Gene Tree for TSPOAP1-AS1 (if available)

No data available for Orthologs for TSPOAP1-AS1 Gene

Paralogs for TSPOAP1-AS1 Gene

No data available for Paralogs for TSPOAP1-AS1 Gene

Variants for TSPOAP1-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TSPOAP1-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
714860 Benign: not provided 58,325,640(+) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
rs61743284 Benign: not specified 58,327,685(+) C/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for TSPOAP1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TSPOAP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2716078 CNV deletion 23290073
nsv457860 CNV loss 19166990
nsv470593 CNV loss 18288195
nsv509663 CNV insertion 20534489
nsv517229 CNV gain+loss 19592680
nsv575799 CNV loss 21841781
nsv575800 CNV gain 21841781
nsv819948 CNV loss 19587683
nsv952349 CNV deletion 24416366

Additional Variant Information for TSPOAP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPOAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPOAP1-AS1 Gene

Disorders for TSPOAP1-AS1 Gene

Additional Disease Information for TSPOAP1-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for TSPOAP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPOAP1-AS1 Gene

Publications for TSPOAP1-AS1 Gene

  1. Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in patients with breast cancer. (PMID: 29707762) Li J … Xu C (International journal of cancer 2018) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for TSPOAP1-AS1 gene in Mastermind

Products for TSPOAP1-AS1 Gene

Sources for TSPOAP1-AS1 Gene