Aliases for TSPOAP1-AS1 Gene

Subcategory (RNA class) for TSPOAP1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for TSPOAP1-AS1 Gene

  • TSPOAP1, SUPT4H1 And RNF43 Antisense RNA 1 2 3 5
  • BZRAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TSPOAP1 Antisense RNA 1 2 3
  • TSPOAP1-AS1 2 170
  • HSALNG0117711 169
  • NONHSAG022327 94
  • BZRAP1-AS1 3
  • Lnc-LPO-2 170

External Ids for TSPOAP1-AS1 Gene

Previous HGNC Symbols for TSPOAP1-AS1 Gene

  • BZRAP1-AS1

Summaries for TSPOAP1-AS1 Gene

GeneCards Summary for TSPOAP1-AS1 Gene

TSPOAP1-AS1 (TSPOAP1, SUPT4H1 And RNF43 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for TSPOAP1-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for TSPOAP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TSPOAP1-AS1 Gene

Genomics for TSPOAP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TSPOAP1-AS1 Gene

Promoters and enhancers for TSPOAP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J058323 Promoter/Enhancer 1 Ensembl ENCODE 750.6 +0.3 273 1.6 NKRF ZNF687 ZBED1 GLIS2 RFX1 PATZ1 POLR2A ZBTB20 ZXDB DPF2 TSPOAP1-AS1 lnc-SUPT4H1-2 SUPT4H1 RNF43 TSPOAP1
GH17J058326 Promoter/Enhancer 0.9 Ensembl dbSUPER 750.6 +1.8 1829 1 POLR2A REST HES1 ZBTB26 PTBP1 TARDBP SUPT5H CTCF GLIS1 ZBTB12 TSPOAP1-AS1 lnc-SUPT4H1-2 SUPT4H1 RNF43 SRSF1 TSPOAP1
GH17J058324 Enhancer 0.2 CraniofacialAtlas 750.6 -0.7 -732 0.2 TSPOAP1-AS1 lnc-SUPT4H1-2 SUPT4H1 RNF43 TSPOAP1 lnc-MPO-4
GH17J058328 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +13.0 13045 21 ZNF24 SP1 ZBTB40 SMARCE1 HDAC2 HCFC1 TRIM22 RUNX1 MYC CC2D1A TSPOAP1 MIR4736 SRSF1 MKS1 VEZF1 SMG8 SUPT4H1 ENSG00000264112 TRIM37 ENSG00000224738
GH17J058350 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +28.5 28504 4.3 PPP1R10 FOXK2 SIN3A ZNF24 SP1 ZBTB40 SREBF1 SIX5 SMARCE1 RBPJ SUPT4H1 SRSF1 MKS1 TSPOAP1 SMG8 SETP3 OR4D1 ENSG00000264914 LOC101927557 SPDYE22P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSPOAP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPOAP1-AS1 Gene

Genomic Locations for TSPOAP1-AS1 Gene
chr17:58,324,472-58,415,766
(GRCh38/hg38)
Size:
91,295 bases
Orientation:
Plus strand
chr17:56,402,811-56,493,127
(GRCh37/hg19)
Size:
90,317 bases
Orientation:
Plus strand

Genomic View for TSPOAP1-AS1 Gene

Genes around TSPOAP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPOAP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPOAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPOAP1-AS1 Gene

Proteins for TSPOAP1-AS1 Gene

Post-translational modifications for TSPOAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPOAP1-AS1 Gene

Domains & Families for TSPOAP1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSPOAP1-AS1 Gene

Function for TSPOAP1-AS1 Gene

Phenotypes From GWAS Catalog for TSPOAP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPOAP1-AS1 Gene

Localization for TSPOAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPOAP1-AS1 Gene

Pathways & Interactions for TSPOAP1-AS1 Gene

PathCards logo

SuperPathways for TSPOAP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPOAP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSPOAP1-AS1 Gene

Drugs & Compounds for TSPOAP1-AS1 Gene

No Compound Related Data Available

Transcripts for TSPOAP1-AS1 Gene

mRNA/cDNA for TSPOAP1-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TSPOAP1-AS1 Gene

No ASD Table

Relevant External Links for TSPOAP1-AS1 Gene

GeneLoc Exon Structure for
TSPOAP1-AS1
ECgene alternative splicing isoforms for
TSPOAP1-AS1

Expression for TSPOAP1-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPOAP1-AS1 Gene

Orthologs for TSPOAP1-AS1 Gene

Evolution for TSPOAP1-AS1 Gene

ENSEMBL:
Gene Tree for TSPOAP1-AS1 (if available)
TreeFam:
Gene Tree for TSPOAP1-AS1 (if available)

No data available for Orthologs for TSPOAP1-AS1 Gene

Paralogs for TSPOAP1-AS1 Gene

No data available for Paralogs for TSPOAP1-AS1 Gene

Variants for TSPOAP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TSPOAP1-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs61743284 benign, not specified 58,327,685(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000021468 -- 58,324,445(+) C/A/T upstream_transcript_variant
rs1000174411 -- 58,341,965(+) A/C/G intron_variant
rs1000187834 -- 58,348,264(+) A/C/G intron_variant
rs1000195216 -- 58,350,298(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TSPOAP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2716078 CNV deletion 23290073
nsv457860 CNV loss 19166990
nsv470593 CNV loss 18288195
nsv509663 CNV insertion 20534489
nsv517229 CNV gain+loss 19592680
nsv575799 CNV loss 21841781
nsv575800 CNV gain 21841781
nsv819948 CNV loss 19587683
nsv952349 CNV deletion 24416366

Additional Variant Information for TSPOAP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPOAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPOAP1-AS1 Gene

Disorders for TSPOAP1-AS1 Gene

Additional Disease Information for TSPOAP1-AS1

No disorders were found for TSPOAP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPOAP1-AS1 Gene

Publications for TSPOAP1-AS1 Gene

  1. Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in patients with breast cancer. (PMID: 29707762) Li J … Xu C (International journal of cancer 2018) 2 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for TSPOAP1-AS1 Gene

Sources for TSPOAP1-AS1 Gene