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Aliases for TSPEAR-AS1 Gene

Subcategory (RNA class) for TSPEAR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TSPEAR-AS1 Gene

  • TSPEAR Antisense RNA 1 2 3 5
  • TSPEAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • C21orf31 3

External Ids for TSPEAR-AS1 Gene

Previous GeneCards Identifiers for TSPEAR-AS1 Gene

  • GC21P045927
  • GC21P045936
  • GC21P045942
  • GC21P045955
  • GC21P045965

Summaries for TSPEAR-AS1 Gene

GeneCards Summary for TSPEAR-AS1 Gene

TSPEAR-AS1 (TSPEAR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TSPEAR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPEAR-AS1 Gene

Genomics for TSPEAR-AS1 Gene

GeneHancer (GH) Regulatory Elements for TSPEAR-AS1 Gene

Promoters and enhancers for TSPEAR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044505 Enhancer 0.9 FANTOM5 600.7 -0.1 -135 0.4 ELF3 MNT TFE3 PPARG KAT8 CREB1 CEBPA GATAD2A RXRB GABPA TSPEAR-AS1 PIR35009 GC21P044459 TSPEAR
GH21J044369 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE 10.6 -135.6 -135637 1.1 ZSCAN21 MYC TFE3 SP7 SP5 KLF14 EGR1 FOSL2 CREB1 GLIS2 TRPM2 TSPEAR-AS1 ICOSLG TRAPPC10 PIR42451 TRPM2-AS
GH21J044752 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 10.6 +246.9 246856 1.4 MYC FOSL2 CREB1 GATAD2B ZBTB33 TARDBP CTCF CTBP1 MNT SCRT2 TSPEAR TSPEAR-AS2 KRTAP10-2 KRTAP10-1 TSPEAR-AS1 LINC01424 UBE2G2 PIR42817 GC21M046951
GH21J044789 Enhancer 1 Ensembl ENCODE 10.8 +285.8 285773 5.2 CTCF PPARG ZNF548 RAD21 SMARCA4 KAT8 ARID2 CEBPA ZNF143 REST UBE2G2 PTTG1IP SUMO3 TSPEAR-AS2 ENSG00000184441 TSPEAR-AS1 KRTAP10-1 KRTAP10-2 POFUT2 KRTAP12-1
GH21J044778 Enhancer 1.1 Ensembl ENCODE 10.4 +272.7 272665 0.6 ZNF652 ELF3 CEBPG TRIM24 SP1 KAT8 RXRA SOX13 CEBPA GATAD2A UBE2G2 LINC01424 SUMO3 TSPEAR-AS2 PTTG1IP TSPEAR-AS1 ADARB1 SSR4P1 GC21M046951 PIR42817
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPEAR-AS1 Gene

Genomic Locations for TSPEAR-AS1 Gene
chr21:44,506,044-44,516,575
(GRCh38/hg38)
Size:
10,532 bases
Orientation:
Plus strand
chr21:45,926,690-45,935,738
(GRCh37/hg19)
Size:
9,049 bases
Orientation:
Plus strand

Genomic View for TSPEAR-AS1 Gene

Genes around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPEAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPEAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPEAR-AS1 Gene

Proteins for TSPEAR-AS1 Gene

Post-translational modifications for TSPEAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPEAR-AS1 Gene

Domains & Families for TSPEAR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPEAR-AS1 Gene

Function for TSPEAR-AS1 Gene

Phenotypes From GWAS Catalog for TSPEAR-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPEAR-AS1 Gene

Localization for TSPEAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPEAR-AS1 Gene

Pathways & Interactions for TSPEAR-AS1 Gene

PathCards logo

SuperPathways for TSPEAR-AS1 Gene

No Data Available

Interacting Proteins for TSPEAR-AS1 Gene

Gene Ontology (GO) - Biological Process for TSPEAR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSPEAR-AS1 Gene

Drugs & Compounds for TSPEAR-AS1 Gene

No Compound Related Data Available

Transcripts for TSPEAR-AS1 Gene

mRNA/cDNA for TSPEAR-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPEAR-AS1 Gene

No ASD Table

Relevant External Links for TSPEAR-AS1 Gene

GeneLoc Exon Structure for
TSPEAR-AS1
ECgene alternative splicing isoforms for
TSPEAR-AS1

Expression for TSPEAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPEAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TSPEAR-AS1 Gene

This gene is overexpressed in Spleen (x5.8) and Liver (x4.3).
genes like me logo Genes that share expression patterns with TSPEAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPEAR-AS1 Gene

Orthologs for TSPEAR-AS1 Gene

Evolution for TSPEAR-AS1 Gene

ENSEMBL:
Gene Tree for TSPEAR-AS1 (if available)
TreeFam:
Gene Tree for TSPEAR-AS1 (if available)

No data available for Orthologs for TSPEAR-AS1 Gene

Paralogs for TSPEAR-AS1 Gene

No data available for Paralogs for TSPEAR-AS1 Gene

Variants for TSPEAR-AS1 Gene

Sequence variations from dbSNP and Humsavar for TSPEAR-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs147258456 benign-likely-benign, not specified 44,509,207(+) G/A intron_variant
rs200711828 likely-benign, not specified 44,509,192(+) C/T intron_variant
rs62218852 likely-benign, not specified 44,509,255(+) G/A non_coding_transcript_variant
rs781882860 likely-benign, not specified 44,504,767(+) G/A/T upstream_transcript_variant
rs150792705 uncertain-significance, not specified 44,509,263(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TSPEAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2723638 CNV deletion 23290073
esv2723670 CNV deletion 23290073
esv33817 CNV loss 17666407
nsv1055163 CNV gain 25217958
nsv1058359 CNV gain 25217958
nsv587802 CNV loss 21841781
nsv587803 CNV loss 21841781
nsv834109 CNV loss 17160897
nsv953646 CNV deletion 24416366

Additional Variant Information for TSPEAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPEAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPEAR-AS1 Gene

Disorders for TSPEAR-AS1 Gene

Additional Disease Information for TSPEAR-AS1

No disorders were found for TSPEAR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPEAR-AS1 Gene

Publications for TSPEAR-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58

Products for TSPEAR-AS1 Gene

Sources for TSPEAR-AS1 Gene

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