Aliases for TSPEAR-AS1 Gene

Subcategory (RNA class) for TSPEAR-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TSPEAR-AS1 Gene

  • TSPEAR Antisense RNA 1 2 3 5
  • TSPEAR-AS1 2 5 165
  • TSPEAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG033037.2 91
  • HSALNG0133548 164
  • C21orf31 3

External Ids for TSPEAR-AS1 Gene

Previous GeneCards Identifiers for TSPEAR-AS1 Gene

  • GC21P045927
  • GC21P045936
  • GC21P045942
  • GC21P045955
  • GC21P045965

Summaries for TSPEAR-AS1 Gene

GeneCards Summary for TSPEAR-AS1 Gene

TSPEAR-AS1 (TSPEAR Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TSPEAR-AS1 include Deafness, Autosomal Recessive 98.

Additional gene information for TSPEAR-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TSPEAR-AS1 Gene

Genomics for TSPEAR-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around TSPEAR-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TSPEAR-AS1 Gene

Genomic Locations for TSPEAR-AS1 Gene
chr21:44,506,044-44,516,575
(GRCh38/hg38)
Size:
10,532 bases
Orientation:
Plus strand
chr21:45,926,690-45,935,738
(GRCh37/hg19)
Size:
9,049 bases
Orientation:
Plus strand

Genomic View for TSPEAR-AS1 Gene

Genes around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track
TSPEAR-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TSPEAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPEAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPEAR-AS1 Gene

Proteins for TSPEAR-AS1 Gene

Post-translational modifications for TSPEAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPEAR-AS1 Gene

Domains & Families for TSPEAR-AS1 Gene

Gene Families for TSPEAR-AS1 Gene

genes like me logo Genes that share domains with TSPEAR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSPEAR-AS1 Gene

Function for TSPEAR-AS1 Gene

Phenotypes From GWAS Catalog for TSPEAR-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPEAR-AS1 Gene

Localization for TSPEAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPEAR-AS1 Gene

Pathways & Interactions for TSPEAR-AS1 Gene

PathCards logo

SuperPathways for TSPEAR-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPEAR-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TSPEAR-AS1 Gene

Drugs & Compounds for TSPEAR-AS1 Gene

No Compound Related Data Available

Transcripts for TSPEAR-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TSPEAR-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E4C3_9606 lncRNA 2553 4

HGNC: 1271,

RefSeq: NR_103707,

LncBook: HSALNT0274496,

NONCODE: NONHSAT082862.2,

URS0000505C37_9606 lncRNA 374 4

Ensembl: ENST00000430181 (view in UCSC) ,

LncBook: HSALNT0274500,

LNCipedia: TSPEAR-AS1:4,

NONCODE: NONHSAT082863.2,

URS0000782927_9606 lncRNA 2108 2

Ensembl: ENST00000451035 (view in UCSC) ,

LncBook: HSALNT0274497,

URS00009B29BA_9606 lncRNA 1635 2

LncBook: HSALNT0274498,

NONCODE: NONHSAT191058.1,

TSPEAR-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TSPEAR-AS1 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPEAR-AS1 Gene

No ASD Table

Relevant External Links for TSPEAR-AS1 Gene

GeneLoc Exon Structure for
TSPEAR-AS1

Expression for TSPEAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSPEAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TSPEAR-AS1 Gene

This gene is overexpressed in Spleen (x5.8) and Liver (x4.3).
genes like me logo Genes that share expression patterns with TSPEAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPEAR-AS1 Gene

Orthologs for TSPEAR-AS1 Gene

Evolution for TSPEAR-AS1 Gene

ENSEMBL:
Gene Tree for TSPEAR-AS1 (if available)
TreeFam:
Gene Tree for TSPEAR-AS1 (if available)

No data available for Orthologs for TSPEAR-AS1 Gene

Paralogs for TSPEAR-AS1 Gene

No data available for Paralogs for TSPEAR-AS1 Gene

Variants for TSPEAR-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TSPEAR-AS1 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
684487 Not Provided: Deafness, autosomal recessive 98 44,509,278(+) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
817061 Likely Pathogenic: not provided 44,509,275(+) CAT/C FRAMESHIFT_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs115847549 Benign: not specified; not provided 44,509,309(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs147258456 Benign/Likely Benign: not specified; not provided 44,509,207(+) G/A SYNONYMOUS_VARIANT
rs150792705 Uncertain Significance: not specified 44,509,263(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for TSPEAR-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TSPEAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2723638 CNV deletion 23290073
esv2723670 CNV deletion 23290073
esv33817 CNV loss 17666407
nsv1055163 CNV gain 25217958
nsv1058359 CNV gain 25217958
nsv587802 CNV loss 21841781
nsv587803 CNV loss 21841781
nsv834109 CNV loss 17160897
nsv953646 CNV deletion 24416366

Additional Variant Information for TSPEAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPEAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPEAR-AS1 Gene

Disorders for TSPEAR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TSPEAR-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
deafness, autosomal recessive 98
  • dfnb98
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with TSPEAR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TSPEAR-AS1 Gene

Publications for TSPEAR-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3

Products for TSPEAR-AS1 Gene

Sources for TSPEAR-AS1 Gene