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Aliases for TSPEAR-AS1 Gene

Subcategory (RNA class) for TSPEAR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TSPEAR-AS1 Gene

  • TSPEAR Antisense RNA 1 2 3 5
  • TSPEAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • C21orf31 3

External Ids for TSPEAR-AS1 Gene

Previous GeneCards Identifiers for TSPEAR-AS1 Gene

  • GC21P045927
  • GC21P045936
  • GC21P045942
  • GC21P045955
  • GC21P045965

Summaries for TSPEAR-AS1 Gene

GeneCards Summary for TSPEAR-AS1 Gene

TSPEAR-AS1 (TSPEAR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TSPEAR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPEAR-AS1 Gene

Genomics for TSPEAR-AS1 Gene

GeneHancer (GH) Regulatory Elements for TSPEAR-AS1 Gene

Promoters and enhancers for TSPEAR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I044505 Enhancer 0.9 FANTOM5 550.8 -0.1 -135 0.4 ELF3 FOXA2 MLX ARID4B DMAP1 RARA ETS1 CREM THAP11 ZHX2 TSPEAR-AS1 PIR35009 GC21P044459 TSPEAR
GH21I044504 Enhancer 0.3 Ensembl 550.8 -1.8 -1843 0.4 ZIC2 TSPEAR-AS1 PIR35009 GC21P044459 TSPEAR
GH21I044368 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.6 -135.9 -135918 3.1 PKNOX1 MLX SIN3A ZNF48 GLIS2 KLF7 FOS SP3 SP5 GLIS1 TRPM2 RRP1B TSPEAR-AS1 PWP2 POFUT2 ICOSLG TRAPPC10 PIR42451 TRPM2-AS
GH21I045150 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.3 +647.0 647042 5.1 HDGF PKNOX1 ATF1 YBX1 ZNF48 CBX5 E2F8 ELK1 ARID2 ZNF207 POFUT2 SSR4P1 TSPEAR-AS1 LINC00315 LINC00205 LOC105372835 ADARB1 GC21M045667
GH21I044482 Enhancer 0.9 ENCODE 12 -23.2 -23161 0.2 ELF3 FOXA2 ARID4B DMAP1 DNMT3B THRB ZSCAN9 RAD21 RARA YY1 GC21M045551 GC21M045554 GC21M045557 GC21M045559 GC21M045560 GC21M045563 GC21M045603 GC21M045622 GC21M045623 GC21M045624
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPEAR-AS1 Gene

Genomic Locations for TSPEAR-AS1 Gene
chr21:44,506,044-44,516,575
(GRCh38/hg38)
Size:
10,532 bases
Orientation:
Plus strand
chr21:45,926,690-45,935,738
(GRCh37/hg19)

Genomic View for TSPEAR-AS1 Gene

Genes around TSPEAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPEAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPEAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPEAR-AS1 Gene

Proteins for TSPEAR-AS1 Gene

Post-translational modifications for TSPEAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPEAR-AS1 Gene

Domains & Families for TSPEAR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPEAR-AS1 Gene

Function for TSPEAR-AS1 Gene

Phenotypes From GWAS Catalog for TSPEAR-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPEAR-AS1 Gene

Localization for TSPEAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPEAR-AS1 Gene

Pathways & Interactions for TSPEAR-AS1 Gene

SuperPathways for TSPEAR-AS1 Gene

No Data Available

Interacting Proteins for TSPEAR-AS1 Gene

Gene Ontology (GO) - Biological Process for TSPEAR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSPEAR-AS1 Gene

Drugs & Compounds for TSPEAR-AS1 Gene

No Compound Related Data Available

Transcripts for TSPEAR-AS1 Gene

mRNA/cDNA for TSPEAR-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPEAR-AS1 Gene

No ASD Table

Relevant External Links for TSPEAR-AS1 Gene

GeneLoc Exon Structure for
TSPEAR-AS1
ECgene alternative splicing isoforms for
TSPEAR-AS1

Expression for TSPEAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPEAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TSPEAR-AS1 Gene

This gene is overexpressed in Spleen (x5.8) and Liver (x4.3).
genes like me logo Genes that share expression patterns with TSPEAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPEAR-AS1 Gene

Orthologs for TSPEAR-AS1 Gene

Evolution for TSPEAR-AS1 Gene

ENSEMBL:
Gene Tree for TSPEAR-AS1 (if available)
TreeFam:
Gene Tree for TSPEAR-AS1 (if available)

No data available for Orthologs for TSPEAR-AS1 Gene

Paralogs for TSPEAR-AS1 Gene

No data available for Paralogs for TSPEAR-AS1 Gene

Variants for TSPEAR-AS1 Gene

Sequence variations from dbSNP and Humsavar for TSPEAR-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs781882860 likely-benign, not specified 44,504,767(+) G/A/T upstream_transcript_variant
rs782790512 uncertain-significance, not specified 44,504,850(+) C/T upstream_transcript_variant
rs112006551 benign, not specified 44,504,800(+) C/A/T upstream_transcript_variant
rs115847549 benign, not specified 44,509,309(+) G/A non_coding_transcript_variant
rs138358770 benign, not specified 44,504,857(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TSPEAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2723638 CNV deletion 23290073
esv2723670 CNV deletion 23290073
esv33817 CNV loss 17666407
nsv1055163 CNV gain 25217958
nsv1058359 CNV gain 25217958
nsv587802 CNV loss 21841781
nsv587803 CNV loss 21841781
nsv834109 CNV loss 17160897
nsv953646 CNV deletion 24416366

Additional Variant Information for TSPEAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPEAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSPEAR-AS1 Gene

Disorders for TSPEAR-AS1 Gene

Additional Disease Information for TSPEAR-AS1

No disorders were found for TSPEAR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPEAR-AS1 Gene

Publications for TSPEAR-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58

Products for TSPEAR-AS1 Gene

Sources for TSPEAR-AS1 Gene

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