Aliases for TSPAN9-IT1 Gene

Subcategory (RNA class) for TSPAN9-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TSPAN9-IT1 Gene

  • TSPAN9 Intronic Transcript 1 2 3 5
  • TSPAN9 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • TSPAN9-IT1 2 168
  • HSALNG0088636 167
  • NONHSAG010209 92

External Ids for TSPAN9-IT1 Gene

Previous GeneCards Identifiers for TSPAN9-IT1 Gene

  • GC00U933783
  • GC12P003259

Summaries for TSPAN9-IT1 Gene

GeneCards Summary for TSPAN9-IT1 Gene

TSPAN9-IT1 (TSPAN9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TSPAN9-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TSPAN9-IT1 Gene

Genomics for TSPAN9-IT1 Gene

GeneHancer (GH) Regulatory Elements for TSPAN9-IT1 Gene

Promoters and enhancers for TSPAN9-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003144 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.9 904 12.6 TEAD4 ZIC2 ZNF585B NR2F2 ZFP91 NFIB VEZF1 RAD21 RXRA GLIS1 TSPAN9-IT1 TSPAN9 ENSG00000275850
GH12J003161 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +14.2 14204 4.4 EP300 USF1 NCOR1 TEAD1 ZBTB26 RBM25 KLF9 RAD21 SAP130 CREM TSPAN9 CACNA1C-AS1 ENSG00000275850 TSPAN9-IT1
GH12J003136 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -11.4 -11397 3.6 ZIC2 ZNF341 ZNF263 POLR2A ZFHX2 ZNF768 ZNF18 RXRA GLIS1 SMARCA4 TSPAN9 ENSG00000278469 TSPAN9-IT1
GH12J003129 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.0 -17996 5.2 USF1 ZIC2 ZNF341 FOXA2 NR2F2 CTCF YY1 SPI1 RXRA RAD21 TSPAN9 ENSG00000278469 TSPAN9-IT1
GH12J003167 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +20.6 20604 6 ZSCAN5C TCF12 USF1 JUND FOS ZIC2 POLR2A TRIM28 ATF2 MXI1 ENSG00000275850 TSPAN9 TSPAN9-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSPAN9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPAN9-IT1 Gene

Genomic Locations for TSPAN9-IT1 Gene
chr12:3,149,797-3,151,477
(GRCh38/hg38)
Size:
1,681 bases
Orientation:
Plus strand
chr12:3,258,963-3,260,642
(GRCh37/hg19)
Size:
1,680 bases
Orientation:
Plus strand

Genomic View for TSPAN9-IT1 Gene

Genes around TSPAN9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPAN9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TSPAN9-IT1 Gene

Proteins for TSPAN9-IT1 Gene

Post-translational modifications for TSPAN9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPAN9-IT1 Gene

Domains & Families for TSPAN9-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSPAN9-IT1 Gene

Function for TSPAN9-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPAN9-IT1 Gene

Localization for TSPAN9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPAN9-IT1 Gene

Pathways & Interactions for TSPAN9-IT1 Gene

PathCards logo

SuperPathways for TSPAN9-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TSPAN9-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TSPAN9-IT1 Gene

Drugs & Compounds for TSPAN9-IT1 Gene

No Compound Related Data Available

Transcripts for TSPAN9-IT1 Gene

mRNA/cDNA for TSPAN9-IT1 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN9-IT1 Gene

No ASD Table

Relevant External Links for TSPAN9-IT1 Gene

GeneLoc Exon Structure for
TSPAN9-IT1

Expression for TSPAN9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSPAN9-IT1 Gene

genes like me logo Genes that share expression patterns with TSPAN9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN9-IT1 Gene

Orthologs for TSPAN9-IT1 Gene

Evolution for TSPAN9-IT1 Gene

ENSEMBL:
Gene Tree for TSPAN9-IT1 (if available)
TreeFam:
Gene Tree for TSPAN9-IT1 (if available)

No data available for Orthologs for TSPAN9-IT1 Gene

Paralogs for TSPAN9-IT1 Gene

No data available for Paralogs for TSPAN9-IT1 Gene

Variants for TSPAN9-IT1 Gene

Additional Variant Information for TSPAN9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPAN9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TSPAN9-IT1 Gene

Disorders for TSPAN9-IT1 Gene

No disorders were found for TSPAN9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TSPAN9-IT1 Gene

Publications for TSPAN9-IT1 Gene

No publications were found for TSPAN9-IT1 Gene.

No data available for Mastermind for TSPAN9-IT1 Gene

Products for TSPAN9-IT1 Gene

Sources for TSPAN9-IT1 Gene