Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TSPAN9-IT1 Gene

Subcategory (RNA class) for TSPAN9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TSPAN9-IT1 Gene

  • TSPAN9 Intronic Transcript 1 2 3 5
  • TSPAN9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TSPAN9-IT1 Gene

Previous GeneCards Identifiers for TSPAN9-IT1 Gene

  • GC00U933783
  • GC12P003259

Summaries for TSPAN9-IT1 Gene

GeneCards Summary for TSPAN9-IT1 Gene

TSPAN9-IT1 (TSPAN9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TSPAN9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN9-IT1 Gene

Genomics for TSPAN9-IT1 Gene

GeneHancer (GH) Regulatory Elements for TSPAN9-IT1 Gene

Promoters and enhancers for TSPAN9-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I003148 Enhancer 0.9 Ensembl ENCODE dbSUPER 550.8 +0.8 819 5.1 NFIB GLIS1 MNT REST ZNF600 ZIC2 ZBTB20 TSPAN9-IT1 TSPAN9 ENSG00000275850
GH12I003167 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +20.0 19990 4.3 INSM2 KLF17 BATF ZNF2 EGR1 ZNF366 ZSCAN5C RCOR1 FOS KLF13 ENSG00000275850 TSPAN9 TSPAN9-IT1
GH12I003144 Enhancer 0.5 dbSUPER 0.8 -4.6 -4617 1.8 PKNOX1 RXRA ZNF585B MAX HNF4A RAD21 CBX3P4 TSPAN9 TSPAN9-IT1 ENSG00000278469
GH12I003164 Enhancer 1 ENCODE dbSUPER 0.4 +15.4 15441 1.8 ELF3 ZFP64 ARID4B DMAP1 RAD21 ZSCAN9 RARA ETS1 CREM MIXL1 TSPAN9 ENSG00000275850 TSPAN9-IT1
GH12I003158 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +9.3 9348 1.8 OSR2 GLIS1 SCRT2 FOXP2 CEBPG ZIC2 ZNF423 TSPAN9 TSPAN9-IT1 ENSG00000275850
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSPAN9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPAN9-IT1 Gene

Genomic Locations for TSPAN9-IT1 Gene
chr12:3,149,797-3,151,476
(GRCh38/hg38)
Size:
1,680 bases
Orientation:
Plus strand
chr12:3,258,963-3,260,642
(GRCh37/hg19)

Genomic View for TSPAN9-IT1 Gene

Genes around TSPAN9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPAN9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TSPAN9-IT1 Gene

Proteins for TSPAN9-IT1 Gene

Post-translational modifications for TSPAN9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPAN9-IT1 Gene

Domains & Families for TSPAN9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPAN9-IT1 Gene

Function for TSPAN9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPAN9-IT1 Gene

Localization for TSPAN9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPAN9-IT1 Gene

Pathways & Interactions for TSPAN9-IT1 Gene

SuperPathways for TSPAN9-IT1 Gene

No Data Available

Interacting Proteins for TSPAN9-IT1 Gene

Gene Ontology (GO) - Biological Process for TSPAN9-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSPAN9-IT1 Gene

Drugs & Compounds for TSPAN9-IT1 Gene

No Compound Related Data Available

Transcripts for TSPAN9-IT1 Gene

mRNA/cDNA for TSPAN9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN9-IT1 Gene

No ASD Table

Relevant External Links for TSPAN9-IT1 Gene

GeneLoc Exon Structure for
TSPAN9-IT1
ECgene alternative splicing isoforms for
TSPAN9-IT1

Expression for TSPAN9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPAN9-IT1 Gene

genes like me logo Genes that share expression patterns with TSPAN9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN9-IT1 Gene

Orthologs for TSPAN9-IT1 Gene

Evolution for TSPAN9-IT1 Gene

ENSEMBL:
Gene Tree for TSPAN9-IT1 (if available)
TreeFam:
Gene Tree for TSPAN9-IT1 (if available)

No data available for Orthologs for TSPAN9-IT1 Gene

Paralogs for TSPAN9-IT1 Gene

No data available for Paralogs for TSPAN9-IT1 Gene

Variants for TSPAN9-IT1 Gene

Additional Variant Information for TSPAN9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPAN9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TSPAN9-IT1 Gene

Disorders for TSPAN9-IT1 Gene

No disorders were found for TSPAN9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TSPAN9-IT1 Gene

Publications for TSPAN9-IT1 Gene

No publications were found for TSPAN9-IT1 Gene.

Products for TSPAN9-IT1 Gene

Sources for TSPAN9-IT1 Gene

Content
Loading form....