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Aliases for TSPAN33 Gene

Aliases for TSPAN33 Gene

  • Tetraspanin 33 2 3 5
  • Proerythroblast New Membrane 3 4
  • TSPAN-33 3 4
  • Penumbra 3 4
  • PEN 3 4
  • Tetraspanin-33 3
  • PEN. 3
  • HPen 4

External Ids for TSPAN33 Gene

Previous GeneCards Identifiers for TSPAN33 Gene

  • GC07P128379
  • GC07P128571
  • GC07P128784
  • GC07P123145

Summaries for TSPAN33 Gene

GeneCards Summary for TSPAN33 Gene

TSPAN33 (Tetraspanin 33) is a Protein Coding gene. Diseases associated with TSPAN33 include Intracranial Vasospasm and Basilar Artery Occlusion. Gene Ontology (GO) annotations related to this gene include enzyme binding. An important paralog of this gene is TSPAN17.

UniProtKB/Swiss-Prot for TSPAN33 Gene

  • Plays an important role in normal erythropoiesis (By similarity). It has a role in the differentiation of erythroid progenitors (By similarity). Regulates maturation and trafficking of the transmembrane metalloprotease ADAM10 (PubMed:26686862). Negatively regulates ligand-induced Notch activity probably by regulating ADAM10 activity (PubMed:26686862).

Additional gene information for TSPAN33 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN33 Gene

Genomics for TSPAN33 Gene

GeneHancer (GH) Regulatory Elements for TSPAN33 Gene

Promoters and enhancers for TSPAN33 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I129144 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 562.2 +0.2 175 1.4 PKNOX1 FOXA2 ARID4B SIN3A ZNF2 GLIS2 ZNF213 ZNF143 ATF7 RUNX3 TSPAN33 GC07P129165
GH07I129099 Enhancer 1.1 Ensembl ENCODE 24.6 -42.7 -42671 4.4 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 RXRA MIER2 REST TSPAN33 ENSG00000242162 TNPO3 TPI1P2 ATP6V1F FLNC-AS1 ENSG00000243230 AHCYL2 ENSG00000241573 CYCSP20
GH07I128936 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 10.5 -205.1 -205130 5.5 HDGF PKNOX1 SMAD1 ARID4B SIN3A IRF4 GLIS2 ZNF207 ZNF143 ATF7 IRF5 GC07P128963 GC07P128967 GC07P128965 GC07P128964 KCP ENSG00000242162 FLNC FLNC-AS1 ATP6V1F
GH07I129122 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 13 -21.9 -21890 1.6 PKNOX1 BMI1 YBX1 BATF IRF4 ZNF207 ATF7 ETV6 BCLAF1 IKZF2 TNPO3 TSPAN33 ENSG00000242162 TPI1P2 ENSG00000243230 AHCYL2 ATP6V1F NRF1 LOC407835 CYCSP20
GH07I128932 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -210.3 -210276 3.3 HDGF PKNOX1 BATF KLF5 IRF4 ZNF335 ZNF143 ATF7 ETV6 BCLAF1 IRF5 ATP6V1F KCP ENSG00000242162 FLNC FLNC-AS1 TSPAN33 TNPO3 TPI1P2 LOC392787
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSPAN33 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TSPAN33 gene promoter:

Genomic Locations for TSPAN33 Gene

Genomic Locations for TSPAN33 Gene
chr7:129,144,716-129,169,697
(GRCh38/hg38)
Size:
24,982 bases
Orientation:
Plus strand
chr7:128,784,712-128,809,534
(GRCh37/hg19)

Genomic View for TSPAN33 Gene

Genes around TSPAN33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPAN33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPAN33 Gene

Proteins for TSPAN33 Gene

  • Protein details for TSPAN33 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UF1-TSN33_HUMAN
    Recommended name:
    Tetraspanin-33
    Protein Accession:
    Q86UF1

    Protein attributes for TSPAN33 Gene

    Size:
    283 amino acids
    Molecular mass:
    31538 Da
    Quaternary structure:
    • Homodimer; disulfide-linked (PubMed:17158226). Interacts with ADAM10 (PubMed:26686862).

neXtProt entry for TSPAN33 Gene

Post-translational modifications for TSPAN33 Gene

  • Glycosylation at isoforms=172
  • Modification sites at PhosphoSitePlus

Other Protein References for TSPAN33 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TSPAN33 Gene

Domains & Families for TSPAN33 Gene

Gene Families for TSPAN33 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins
  • Transporters

Protein Domains for TSPAN33 Gene

Suggested Antigen Peptide Sequences for TSPAN33 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86UF1

UniProtKB/Swiss-Prot:

TSN33_HUMAN :
  • Belongs to the tetraspanin (TM4SF) family.
Family:
  • Belongs to the tetraspanin (TM4SF) family.
genes like me logo Genes that share domains with TSPAN33: view

Function for TSPAN33 Gene

Molecular function for TSPAN33 Gene

UniProtKB/Swiss-Prot Function:
Plays an important role in normal erythropoiesis (By similarity). It has a role in the differentiation of erythroid progenitors (By similarity). Regulates maturation and trafficking of the transmembrane metalloprotease ADAM10 (PubMed:26686862). Negatively regulates ligand-induced Notch activity probably by regulating ADAM10 activity (PubMed:26686862).

Phenotypes From GWAS Catalog for TSPAN33 Gene

Gene Ontology (GO) - Molecular Function for TSPAN33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019899 enzyme binding IEA,IPI 23091066
genes like me logo Genes that share ontologies with TSPAN33: view
genes like me logo Genes that share phenotypes with TSPAN33: view

Animal Models for TSPAN33 Gene

MGI Knock Outs for TSPAN33:

Animal Model Products

  • Taconic Biosciences Mouse Models for TSPAN33

miRNA for TSPAN33 Gene

miRTarBase miRNAs that target TSPAN33

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TSPAN33 Gene

Localization for TSPAN33 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSPAN33 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TSPAN33 gene
Compartment Confidence
plasma membrane 5
cytoskeleton 3
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for TSPAN33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IDA 23091066
GO:0005887 integral component of plasma membrane IBA --
GO:0009986 cell surface IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TSPAN33: view

Pathways & Interactions for TSPAN33 Gene

SuperPathways for TSPAN33 Gene

No Data Available

Interacting Proteins for TSPAN33 Gene

Selected Interacting proteins: Q86UF1-TSN33_HUMAN for TSPAN33 Gene via IID

Gene Ontology (GO) - Biological Process for TSPAN33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007166 cell surface receptor signaling pathway IBA --
GO:0051604 protein maturation IEA,IDA 23091066
GO:0072659 protein localization to plasma membrane IEA,IDA 23091066
genes like me logo Genes that share ontologies with TSPAN33: view

No data available for Pathways by source and SIGNOR curated interactions for TSPAN33 Gene

Drugs & Compounds for TSPAN33 Gene

No Compound Related Data Available

Transcripts for TSPAN33 Gene

Unigene Clusters for TSPAN33 Gene

Tetraspanin 33:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN33 Gene

No ASD Table

Relevant External Links for TSPAN33 Gene

GeneLoc Exon Structure for
TSPAN33
ECgene alternative splicing isoforms for
TSPAN33

Expression for TSPAN33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSPAN33 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TSPAN33 Gene

This gene is overexpressed in Kidney - Cortex (x6.5).

Protein differential expression in normal tissues from HIPED for TSPAN33 Gene

This gene is overexpressed in Fetal Liver (33.8), Blymphocyte (15.2), Kidney (11.8), and Platelet (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TSPAN33 Gene



Protein tissue co-expression partners for TSPAN33 Gene

NURSA nuclear receptor signaling pathways regulating expression of TSPAN33 Gene:

TSPAN33

SOURCE GeneReport for Unigene cluster for TSPAN33 Gene:

Hs.27267

mRNA Expression by UniProt/SwissProt for TSPAN33 Gene:

Q86UF1-TSN33_HUMAN
Tissue specificity: Predominantly expressed in erythroblasts.

Evidence on tissue expression from TISSUES for TSPAN33 Gene

  • Intestine(4.3)
  • Bone marrow(4.1)
  • Nervous system(2.2)
  • Kidney(2.1)
genes like me logo Genes that share expression patterns with TSPAN33: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN33 Gene

Orthologs for TSPAN33 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSPAN33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSPAN33 33 34
  • 100 (n)
dog
(Canis familiaris)
Mammalia TSPAN33 33 34
  • 92.46 (n)
cow
(Bos Taurus)
Mammalia TSPAN33 33 34
  • 91.17 (n)
mouse
(Mus musculus)
Mammalia Tspan33 33 16 34
  • 90.69 (n)
rat
(Rattus norvegicus)
Mammalia Tspan33 33
  • 90.34 (n)
oppossum
(Monodelphis domestica)
Mammalia TSPAN33 34
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSPAN33 34
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 34
  • 28 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia TSPAN33 34
  • 41 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tspan33 33
  • 75.44 (n)
zebrafish
(Danio rerio)
Actinopterygii tspan33 33 34
  • 73.21 (n)
fruit fly
(Drosophila melanogaster)
Insecta Tsp86D 33 34
  • 55.04 (n)
Tsp3A 34
  • 36 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002257 33
  • 54.68 (n)
Species where no ortholog for TSPAN33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TSPAN33 Gene

ENSEMBL:
Gene Tree for TSPAN33 (if available)
TreeFam:
Gene Tree for TSPAN33 (if available)

Paralogs for TSPAN33 Gene

(15) SIMAP similar genes for TSPAN33 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TSPAN33: view

Variants for TSPAN33 Gene

Sequence variations from dbSNP and Humsavar for TSPAN33 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000094104 -- 129,165,418(+) T/C intron_variant
rs1000308064 -- 129,155,077(+) A/C intron_variant
rs1000423534 -- 129,165,761(+) T/G intron_variant
rs1000943825 -- 129,146,528(+) C/T intron_variant
rs1001009703 -- 129,146,216(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TSPAN33 Gene

Variant ID Type Subtype PubMed ID
nsv831127 CNV gain 17160897

Variation tolerance for TSPAN33 Gene

Residual Variation Intolerance Score: 49% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.49; 10.73% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TSPAN33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPAN33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSPAN33 Gene

Disorders for TSPAN33 Gene

MalaCards: The human disease database

(5) MalaCards diseases for TSPAN33 Gene - From: DISEASES

Disorder Aliases PubMed IDs
intracranial vasospasm
  • vasospasm, intracranial
basilar artery occlusion
subdural empyema
  • subdural abscess
heart sarcoma
  • cardiac sarcoma
stroke, ischemic
  • cerebrovascular accident
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TSPAN33

genes like me logo Genes that share disorders with TSPAN33: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TSPAN33 Gene

Publications for TSPAN33 Gene

  1. The human Penumbra gene is mapped to a region on chromosome 7 frequently deleted in myeloid malignancies. (PMID: 16213355) Chen Z … Tsai S (Cancer genetics and cytogenetics 2005) 2 3 4 58
  2. Penumbra encodes a novel tetraspanin that is highly expressed in erythroid progenitors and promotes effective erythropoiesis. (PMID: 17158226) Heikens MJ … Tsai S (Blood 2007) 3 4 58
  3. The phylogenetic analysis of tetraspanins projects the evolution of cell-cell interactions from unicellular to multicellular organisms. (PMID: 16242907) Huang S … Xu A (Genomics 2005) 2 3 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for TSPAN33 Gene

Sources for TSPAN33 Gene

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