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Aliases for TSPAN18-AS1 Gene

Subcategory (RNA class) for TSPAN18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TSPAN18-AS1 Gene

  • TSPAN18 Antisense RNA 1 2
  • Novel Transcript 5
  • AC104241.1 5

External Ids for TSPAN18-AS1 Gene

Summaries for TSPAN18-AS1 Gene

GeneCards Summary for TSPAN18-AS1 Gene

TSPAN18-AS1 (TSPAN18 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Among its related pathways are Translational Control.

Additional gene information for TSPAN18-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN18-AS1 Gene

Genomics for TSPAN18-AS1 Gene

GeneHancer (GH) Regulatory Elements for TSPAN18-AS1 Gene

Promoters and enhancers for TSPAN18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J044736 Enhancer 0.5 Ensembl dbSUPER 600.7 +0.1 91 0.4 POLR2A TSPAN18-AS1 TSPAN18
GH11J044725 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.9 8856 5.4 SP1 CTCF ZNF148 ZBTB7A ELF1 RELA ZNF639 RAD21 GLIS2 ZBTB8A TSPAN18 EXT2 TSPAN18-AS1 GC11P044707
GH11J044733 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +2.3 2291 2.4 MAFK ZIC2 ZNF316 NFE2 USF1 MAFG ZKSCAN1 USF2 EMSY TSPAN18 ALKBH3-AS1 TSPAN18-AS1
GH11J044731 Enhancer 0.8 ENCODE dbSUPER 0.7 +4.4 4427 1.7 PRDM10 ZSCAN4 CTBP1 ZFHX2 ZNF189 RCOR1 IKZF1 TEAD4 EXT2 TSPAN18-AS1 TSPAN18
GH11J044753 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -18.2 -18208 3.8 POLR2A MNT JUNB RCOR1 CEBPG BATF GLIS1 NANOG POU5F1 TSPAN18 EXT2 PIR54163 TSPAN18-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSPAN18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSPAN18-AS1 Gene

Genomic Locations for TSPAN18-AS1 Gene
chr11:44,719,392-44,736,692
(GRCh38/hg38)
Size:
17,301 bases
Orientation:
Minus strand
chr11:44,740,942-44,758,242
(GRCh37/hg19)
Size:
17,301 bases
Orientation:
Minus strand

Genomic View for TSPAN18-AS1 Gene

Genes around TSPAN18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPAN18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TSPAN18-AS1 Gene

Proteins for TSPAN18-AS1 Gene

Post-translational modifications for TSPAN18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPAN18-AS1 Gene

Domains & Families for TSPAN18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPAN18-AS1 Gene

Function for TSPAN18-AS1 Gene

Phenotypes From GWAS Catalog for TSPAN18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPAN18-AS1 Gene

Localization for TSPAN18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPAN18-AS1 Gene

Pathways & Interactions for TSPAN18-AS1 Gene

PathCards logo

SuperPathways for TSPAN18-AS1 Gene

SuperPathway Contained pathways
1 Translational Control
genes like me logo Genes that share pathways with TSPAN18-AS1: view

Pathways by source for TSPAN18-AS1 Gene

1 Cell Signaling Technology pathway for TSPAN18-AS1 Gene

Interacting Proteins for TSPAN18-AS1 Gene

Gene Ontology (GO) - Biological Process for TSPAN18-AS1 Gene

None

No data available for SIGNOR curated interactions for TSPAN18-AS1 Gene

Drugs & Compounds for TSPAN18-AS1 Gene

No Compound Related Data Available

Transcripts for TSPAN18-AS1 Gene

mRNA/cDNA for TSPAN18-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN18-AS1 Gene

No ASD Table

Relevant External Links for TSPAN18-AS1 Gene

GeneLoc Exon Structure for
TSPAN18-AS1
ECgene alternative splicing isoforms for
TSPAN18-AS1

Expression for TSPAN18-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN18-AS1 Gene

Orthologs for TSPAN18-AS1 Gene

Evolution for TSPAN18-AS1 Gene

ENSEMBL:
Gene Tree for TSPAN18-AS1 (if available)
TreeFam:
Gene Tree for TSPAN18-AS1 (if available)

No data available for Orthologs for TSPAN18-AS1 Gene

Paralogs for TSPAN18-AS1 Gene

No data available for Paralogs for TSPAN18-AS1 Gene

Variants for TSPAN18-AS1 Gene

Additional Variant Information for TSPAN18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPAN18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TSPAN18-AS1 Gene

Disorders for TSPAN18-AS1 Gene

No disorders were found for TSPAN18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TSPAN18-AS1 Gene

Publications for TSPAN18-AS1 Gene

No publications were found for TSPAN18-AS1 Gene.

No data available for External Links for TSPAN18-AS1 Gene

Products for TSPAN18-AS1 Gene

Sources for TSPAN18-AS1 Gene

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