Aliases for TSPAN18-AS1 Gene
Subcategory (RNA class) for TSPAN18-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
13
External Ids for TSPAN18-AS1 Gene
- HGNC: 54221
- Ensembl: ENSG00000255032
Summaries for TSPAN18-AS1 Gene
GeneCards Summary for TSPAN18-AS1 Gene
TSPAN18-AS1 (TSPAN18 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Among its related pathways are Translational Control.
Additional gene information for TSPAN18-AS1 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN18-AS1 Gene
Genomics for TSPAN18-AS1 Gene
GeneHancer (GH) Regulatory Elements for TSPAN18-AS1 Gene
Promoters and enhancers for TSPAN18-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J044736 | Enhancer | 0.5 | Ensembl dbSUPER | 600.7 | +0.1 | 91 | 0.4 | POLR2A | TSPAN18-AS1 TSPAN18 | |
| GH11J044725 | Promoter/Enhancer | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | +8.9 | 8856 | 5.4 | SP1 CTCF ZNF148 ZBTB7A ELF1 RELA ZNF639 RAD21 GLIS2 ZBTB8A | TSPAN18 EXT2 TSPAN18-AS1 GC11P044707 | |
| GH11J044733 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.7 | +2.3 | 2291 | 2.4 | MAFK ZIC2 ZNF316 NFE2 USF1 MAFG ZKSCAN1 USF2 EMSY | TSPAN18 ALKBH3-AS1 TSPAN18-AS1 | |
| GH11J044731 | Enhancer | 0.8 | ENCODE dbSUPER | 0.7 | +4.4 | 4427 | 1.7 | PRDM10 ZSCAN4 CTBP1 ZFHX2 ZNF189 RCOR1 IKZF1 TEAD4 | EXT2 TSPAN18-AS1 TSPAN18 | |
| GH11J044753 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.4 | -18.2 | -18208 | 3.8 | POLR2A MNT JUNB RCOR1 CEBPG BATF GLIS1 NANOG POU5F1 | TSPAN18 EXT2 PIR54163 TSPAN18-AS1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around TSPAN18-AS1 on UCSC Golden Path with GeneCards custom track
Genomic Locations for TSPAN18-AS1 Gene
Genomic Locations for TSPAN18-AS1 Gene
- chr11:44,719,392-44,736,692
- (GRCh38/hg38)
- Size:
- 17,301 bases
- Orientation:
- Minus strand
- chr11:44,740,942-44,758,242
- (GRCh37/hg19)
- Size:
- 17,301 bases
- Orientation:
- Minus strand
Genomic View for TSPAN18-AS1 Gene
Genes around TSPAN18-AS1 on UCSC Golden Path with GeneCards custom track
TSPAN18-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for TSPAN18-AS1 Gene
Proteins for TSPAN18-AS1 Gene
Post-translational modifications for TSPAN18-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TSPAN18-AS1
- Origene Custom Protein Services for TSPAN18-AS1
No data available for DME Specific Peptides for TSPAN18-AS1 Gene
Domains & Families for TSPAN18-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSPAN18-AS1 Gene
Function for TSPAN18-AS1 Gene
Phenotypes From GWAS Catalog for TSPAN18-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for TSPAN18-AS1
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPAN18-AS1 Gene
Localization for TSPAN18-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPAN18-AS1 Gene
Pathways & Interactions for TSPAN18-AS1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Translational Control | ||
Pathways by source for TSPAN18-AS1 Gene
1 Cell Signaling Technology pathway for TSPAN18-AS1 Gene
Interacting Proteins for TSPAN18-AS1 Gene
No data available for SIGNOR curated interactions for TSPAN18-AS1 Gene
Transcripts for TSPAN18-AS1 Gene
mRNA/cDNA for TSPAN18-AS1 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000530039 628 bps (ENST00000530039.1)
- (1) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for TSPAN18-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for TSPAN18-AS1 Gene
- GeneLoc Exon Structure for
- TSPAN18-AS1
- ECgene alternative splicing isoforms for
- TSPAN18-AS1
Expression for TSPAN18-AS1 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN18-AS1 Gene
Orthologs for TSPAN18-AS1 Gene
No data available for Orthologs for TSPAN18-AS1 Gene
Paralogs for TSPAN18-AS1 Gene
No data available for Paralogs for TSPAN18-AS1 Gene
Variants for TSPAN18-AS1 Gene
Additional Variant Information for TSPAN18-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TSPAN18-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TSPAN18-AS1 Gene
Disorders for TSPAN18-AS1 Gene
No disorders were found for TSPAN18-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TSPAN18-AS1 Gene
Publications for TSPAN18-AS1 Gene
No publications were found for TSPAN18-AS1 Gene.
No data available for External Links for TSPAN18-AS1 Gene
Products for TSPAN18-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TSPAN18-AS1
- Origene Custom Protein Services for TSPAN18-AS1
- Browse OriGene Inhibitory RNA Products For TSPAN18-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for TSPAN18-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For TSPAN18-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for TSPAN18-AS1
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for TSPAN18-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for TSPAN18-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for TSPAN18-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for TSPAN18-AS1
Sources for TSPAN18-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind