Aliases for TSPAN18-AS1 Gene

Subcategory (RNA class) for TSPAN18-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TSPAN18-AS1 Gene

  • TSPAN18 Antisense RNA 1 2 3 5
  • TSPAN18-AS1 2 5
  • NONHSAG008150.2 91
  • Lnc-TP53I11-3 165
  • HSALNG0083896 164

External Ids for TSPAN18-AS1 Gene

Previous GeneCards Identifiers for TSPAN18-AS1 Gene

  • GC11U903161

Summaries for TSPAN18-AS1 Gene

GeneCards Summary for TSPAN18-AS1 Gene

TSPAN18-AS1 (TSPAN18 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TSPAN18-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TSPAN18-AS1 Gene

Genomics for TSPAN18-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TSPAN18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J044734 Enhancer 0.5 dbSUPER 600.7 +1.8 1774 1.3 ZIC2 NFE2 ZNF316 MAFF MAFK ZKSCAN1 MAFG EMSY TSPAN18-AS1 TSPAN18 5EW4_A-010 TP53I11
GH11J044737 Enhancer 0.4 CraniofacialAtlas dbSUPER 600.7 -0.4 -359 0.4 RUNX3 TSPAN18-AS1 TSPAN18 piR-33164-005 TP53I11
GH11J044725 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.0 8989 5.7 CTCF TEAD4 PRDM10 ZNF512 KDM1A ZNF692 LARP7 ZNF143 RELA ZIC2 TSPAN18 5EW4_A-010 EXT2 TSPAN18-AS1 TP53I11
GH11J044731 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 0.7 +4.4 4427 1.7 PRDM10 ZSCAN4 CTBP1 ZFHX2 ZNF189 RCOR1 ATF4 IKZF1 TEAD4 GATA2 EXT2 TSPAN18-AS1 5EW4_A-010 TSPAN18 TP53I11
GH11J044758 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -24.9 -24909 5.6 CREB1 CTCF ZNF629 KDM1A JUND ZIC2 POLR2A DPF2 EP300 SCRT2 piR-33164-005 TSPAN18 EXT2 TSPAN18-AS1 TP53I11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSPAN18-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TSPAN18-AS1 Gene

Genomic Locations for TSPAN18-AS1 Gene
chr11:44,719,392-44,736,692
(GRCh38/hg38)
Size:
17,301 bases
Orientation:
Minus strand
chr11:44,740,942-44,758,242
(GRCh37/hg19)
Size:
17,301 bases
Orientation:
Minus strand

Genomic View for TSPAN18-AS1 Gene

Genes around TSPAN18-AS1 on UCSC Golden Path with GeneCards custom track
TSPAN18-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TSPAN18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TSPAN18-AS1 Gene

Proteins for TSPAN18-AS1 Gene

Post-translational modifications for TSPAN18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSPAN18-AS1 Gene

Domains & Families for TSPAN18-AS1 Gene

Gene Families for TSPAN18-AS1 Gene

genes like me logo Genes that share domains with TSPAN18-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSPAN18-AS1 Gene

Function for TSPAN18-AS1 Gene

Phenotypes From GWAS Catalog for TSPAN18-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSPAN18-AS1 Gene

Localization for TSPAN18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSPAN18-AS1 Gene

Pathways & Interactions for TSPAN18-AS1 Gene

PathCards logo

SuperPathways for TSPAN18-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPAN18-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TSPAN18-AS1 Gene

Drugs & Compounds for TSPAN18-AS1 Gene

No Compound Related Data Available

Transcripts for TSPAN18-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TSPAN18-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000045CA4A_9606 lncRNA 628 5

HGNC: 54221,

Ensembl: ENST00000530039 (view in UCSC) ,

LncBook: HSALNT0174688,

LNCipedia: lnc-TP53I11-3:1,

NONCODE: NONHSAT018990.2,

TSPAN18-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TSPAN18-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN18-AS1 Gene

No ASD Table

Relevant External Links for TSPAN18-AS1 Gene

GeneLoc Exon Structure for
TSPAN18-AS1

Expression for TSPAN18-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSPAN18-AS1 Gene

Orthologs for TSPAN18-AS1 Gene

Evolution for TSPAN18-AS1 Gene

ENSEMBL:
Gene Tree for TSPAN18-AS1 (if available)
TreeFam:
Gene Tree for TSPAN18-AS1 (if available)

No data available for Orthologs for TSPAN18-AS1 Gene

Paralogs for TSPAN18-AS1 Gene

No data available for Paralogs for TSPAN18-AS1 Gene

Variants for TSPAN18-AS1 Gene

Additional Variant Information for TSPAN18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPAN18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TSPAN18-AS1 Gene

Disorders for TSPAN18-AS1 Gene

No disorders were found for TSPAN18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TSPAN18-AS1 Gene

Publications for TSPAN18-AS1 Gene

No publications were found for TSPAN18-AS1 Gene.

No data available for Mastermind for TSPAN18-AS1 Gene

Products for TSPAN18-AS1 Gene

Sources for TSPAN18-AS1 Gene