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Aliases for TSL Gene

Subcategory (RNA class) for TSL Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for TSL Gene

  • Testis-Expressed, Seven-Twelve, Leukemia 3

External Ids for TSL Gene

Previous GeneCards Identifiers for TSL Gene

  • GC00U922257
  • GC07U902971

Summaries for TSL Gene

GeneCards Summary for TSL Gene

TSL (Testis-Expressed, Seven-Twelve, Leukemia) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for TSL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSL Gene

Genomics for TSL Gene

GeneHancer (GH) Regulatory Elements for TSL Gene

Promoters and enhancers for TSL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I027606 Enhancer 1.5 UCNEbase Ensembl ENCODE 0.4 -9.0 -9000 2.7 PKNOX1 FOXA2 FEZF1 BRCA1 YY1 ZNF213 RXRA TSHZ1 ZNF488 REST HIBADH TAX1BP1 TSL PIR36003
GH07I027602 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 -13.1 -13127 1.1 SP1 PRDM6 POU5F1 HIBADH HOTTIP HOXA13 ENSG00000253508 TSL PIR36003
GH07I027608 Enhancer 0.7 ENCODE 0.4 -6.9 -6918 0.6 SMARCE1 MEIS2 RFX1 MAFG CEBPB DPF2 EP300 ZNF830 PRDM6 ZNF316 HIBADH TSL PIR36003
GH07I027639 Enhancer 0.9 Ensembl ENCODE 0.3 +25.2 25153 3.2 MEIS2 JUN MAX RAD21 YY1 SMC3 FOSL2 FOS CHD2 SMARCC1 HIBADH LOC105375211 TSL
GH07I027603 Enhancer 0.6 ENCODE dbSUPER 0.4 -11.9 -11937 0.2 RFX1 RFX3 PRDM1 HIBADH HOXA13 HOTTIP ENSG00000253508 TSL PIR36003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSL on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSL Gene

Genomic Locations for TSL Gene
chr7:27,615,974-27,627,492
(GRCh38/hg38)
Size:
11,519 bases
Orientation:
Plus strand

Genomic View for TSL Gene

Genes around TSL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSL Gene

Function for TSL Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSL Gene

Localization for TSL Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSL Gene

Pathways & Interactions for TSL Gene

No Data Available

Interacting Proteins for TSL Gene

Gene Ontology (GO) - Biological Process for TSL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSL Gene

Drugs & Compounds for TSL Gene

No Compound Related Data Available

Transcripts for TSL Gene

mRNA/cDNA for TSL Gene

(3) Additional mRNA sequences :

Unigene Clusters for TSL Gene

Testis-expressed, seven-twelve, leukemia:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSL Gene

No ASD Table

Relevant External Links for TSL Gene

GeneLoc Exon Structure for
TSL

Expression for TSL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSL Gene

mRNA expression in normal human tissues for TSL Gene

SOURCE GeneReport for Unigene cluster for TSL Gene:

Hs.571330
genes like me logo Genes that share expression patterns with TSL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSL Gene

Orthologs for TSL Gene

No data available for Orthologs and Evolution for TSL Gene

Paralogs for TSL Gene

No data available for Paralogs for TSL Gene

Variants for TSL Gene

Sequence variations from dbSNP and Humsavar for TSL Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000212443 -- 27,622,324(+) C/T intron_variant
rs1000267370 -- 27,619,832(+) A/C intron_variant
rs1000347252 -- 27,622,256(+) G/A intron_variant
rs1000411731 -- 27,616,456(+) T/C non_coding_transcript_variant
rs1000809521 -- 27,614,259(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TSL Gene

Variant ID Type Subtype PubMed ID
esv3612660 CNV loss 21293372
nsv7393 OTHER inversion 18451855

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for TSL Gene

Disorders for TSL Gene

No disorders were found for TSL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSL Gene

Publications for TSL Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for TSL Gene

Sources for TSL Gene

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