Aliases for TSG1 Gene

Subcategory (RNA class) for TSG1 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for TSG1 Gene

  • Tumor Suppressor TSG1 3
  • NONHSAG044379 92
  • HSALNG0052017 167
  • Lnc-MANEA-3 168

External Ids for TSG1 Gene

Previous GeneCards Identifiers for TSG1 Gene

  • GC06U900867
  • GC06P094416

Summaries for TSG1 Gene

GeneCards Summary for TSG1 Gene

TSG1 (Tumor Suppressor TSG1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TSG1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TSG1 Gene

Genomics for TSG1 Gene

GeneHancer (GH) Regulatory Elements for TSG1 Gene

Promoters and enhancers for TSG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J093721 Enhancer 0.5 Ensembl 0.4 +17.7 17683 0.2 CTCF SMC3 YY1 ZNF654 RAD21 EHMT2 ZNF143 ENSG00000288085 AY314747 TSG1 lnc-MANEA-19
GH06J093783 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.2 +82.1 82109 4.7 EP300 USF1 JUND TEAD4 POLR2A HDAC2 NANOG CEBPB TCF12 JUN lnc-MANEA-19 ENSG00000288085 TSG1
GH06J093752 Enhancer 0.3 Ensembl 0.3 +48.2 48184 0.4 TEAD4 ZSCAN4 ENSG00000288085 lnc-MANEA-19 TSG1 AY314747
GH06J093778 Enhancer 0.4 ENCODE 0.2 +75.2 75174 0.9 TEAD4 CTCF RAD21 TCF7L2 MNT lnc-MANEA-19 ENSG00000288085 TSG1
GH06J093801 Enhancer 0.4 Ensembl 0.2 +97.4 97384 0.4 TEAD4 ZNF316 MAFF MAFK EMSY lnc-MANEA-16 lnc-MANEA-19 TSG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSG1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TSG1 gene promoter:
  • Lhx3a
  • LHX3b
  • Nkx6-1
  • Pax-6
  • POU2F1
  • POU2F1a
  • RP58
  • TBP
  • TFIID

Genomic Locations for TSG1 Gene

Genomic Locations for TSG1 Gene
chr6:93,704,017-93,803,474
(GRCh38/hg38)
Size:
99,458 bases
Orientation:
Plus strand
chr6:94,416,801-94,486,199
(GRCh37/hg19)
Size:
69,399 bases
Orientation:
Plus strand

Genomic View for TSG1 Gene

Genes around TSG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSG1 Gene

Proteins for TSG1 Gene

Post-translational modifications for TSG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSG1 Gene

Domains & Families for TSG1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSG1 Gene

Function for TSG1 Gene

Phenotypes From GWAS Catalog for TSG1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSG1 Gene

Localization for TSG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSG1 Gene

Pathways & Interactions for TSG1 Gene

PathCards logo

SuperPathways for TSG1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TSG1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TSG1 Gene

Drugs & Compounds for TSG1 Gene

No Compound Related Data Available

Transcripts for TSG1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TSG1 Gene

No ASD Table

Relevant External Links for TSG1 Gene

GeneLoc Exon Structure for
TSG1

Expression for TSG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSG1 Gene

mRNA expression in normal human tissues for TSG1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TSG1

SOURCE GeneReport for Unigene cluster for TSG1 Gene:

Hs.509936
genes like me logo Genes that share expression patterns with TSG1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSG1 Gene

Orthologs for TSG1 Gene

No data available for Orthologs and Evolution for TSG1 Gene

Paralogs for TSG1 Gene

No data available for Paralogs for TSG1 Gene

Variants for TSG1 Gene

Additional dbSNP identifiers (rs#s) for TSG1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TSG1 Gene

Variant ID Type Subtype PubMed ID
dgv6093n100 CNV loss 25217958
esv2763946 CNV loss 21179565
nsv1028896 CNV gain 25217958
nsv517329 CNV gain+loss 19592680
nsv5397 CNV deletion 18451855
nsv604164 CNV loss 21841781

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for TSG1 Gene

Disorders for TSG1 Gene

Additional Disease Information for TSG1

Genetic Association Database
(GAD)

No disorders were found for TSG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSG1 Gene

Publications for TSG1 Gene

  1. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41 54
  2. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 41 54
  3. Characterization of frequently deleted 6q locus in prostate cancer. (PMID: 17132090) Sun M … Srivastava S (DNA and cell biology 2006) 3 54

No data available for Mastermind for TSG1 Gene

Products for TSG1 Gene

Sources for TSG1 Gene