Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TSC22D4 Gene

Aliases for TSC22D4 Gene

  • TSC22 Domain Family Member 4 2 3 5
  • TSC22-Related-Inducible Leucine Zipper Protein 2 3 4
  • Tsc-22-Like Protein THG-1 3 4
  • TILZ2 3 4
  • THG1 3 4
  • TSC22 Domain Family Protein 4 3
  • TSC22 Domain Family, Member 4 2
  • THG-1 3

External Ids for TSC22D4 Gene

Previous GeneCards Identifiers for TSC22D4 Gene

  • GC07M099709
  • GC07M099902
  • GC07M100060
  • GC07M094697

Summaries for TSC22D4 Gene

Entrez Gene Summary for TSC22D4 Gene

  • TSC22D4 is a member of the TSC22 domain family of leucine zipper transcriptional regulators (see TSC22D3; MIM 300506) (Kester et al., 1999 [PubMed 10488076]; Fiorenza et al., 2001 [PubMed 11707329]).[supplied by OMIM, Mar 2008]

GeneCards Summary for TSC22D4 Gene

TSC22D4 (TSC22 Domain Family Member 4) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity. An important paralog of this gene is TSC22D1.

UniProtKB/Swiss-Prot for TSC22D4 Gene

  • Transcriptional repressor.

Additional gene information for TSC22D4 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSC22D4 Gene

Genomics for TSC22D4 Gene

GeneHancer (GH) Regulatory Elements for TSC22D4 Gene

Promoters and enhancers for TSC22D4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J100475 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 +1.5 1524 4.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 TSC22D4 ZSCAN25 SRRT TRIM4 GIGYF1 ZNF655 ZNF3 ENSG00000242798 STAG3L5P PPP1R35
GH07J100538 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.6 -65.3 -65334 12.6 CLOCK MLX DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 AGFG2 SRRT PPP1R35 ZSCAN25 SAP25 GIGYF1 MEPCE AP4M1 LRCH4 ENSG00000242798
GH07J100449 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 12.7 +28.6 28551 1.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 POLR2B ZNF766 PPP1R35 ZSCAN25 MEPCE ZNF655 TRIM4 PTCD1 ZNF3 SRRT GIGYF1 STAG3L5P
GH07J100438 Enhancer 1.6 FANTOM5 Ensembl ENCODE 12.5 +36.5 36457 8 HDGF PKNOX1 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 POLR2B ZNF766 PILRA C7orf61 TSC22D4 NYAP1 IRS3P SAP25 FBXO24 LRCH4 GPC2 PVRIG
GH07J101116 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.7 -644.5 -644464 15.1 CLOCK MLX DMAP1 IRF4 YY1 ZNF143 MEF2D SSRP1 ZNF610 GLIS1 SERPINE1 SRRT GIGYF1 ENSG00000242798 PPP1R35 STAG3L5P MEPCE PCOLCE-AS1 PILRB LRCH4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSC22D4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TSC22D4 gene promoter:

Genomic Locations for TSC22D4 Gene

Genomic Locations for TSC22D4 Gene
chr7:100,463,359-100,479,279
(GRCh38/hg38)
Size:
15,921 bases
Orientation:
Minus strand
chr7:100,060,982-100,076,902
(GRCh37/hg19)

Genomic View for TSC22D4 Gene

Genes around TSC22D4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSC22D4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSC22D4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSC22D4 Gene

Proteins for TSC22D4 Gene

  • Protein details for TSC22D4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3Q8-T22D4_HUMAN
    Recommended name:
    TSC22 domain family protein 4
    Protein Accession:
    Q9Y3Q8
    Secondary Accessions:
    • A4D2C3
    • A8MWR6
    • D6W5V9

    Protein attributes for TSC22D4 Gene

    Size:
    395 amino acids
    Molecular mass:
    41026 Da
    Quaternary structure:
    • Forms a homodimer or heterodimer. Can form a heterodimer with TSC22D1.

    Alternative splice isoforms for TSC22D4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TSC22D4 Gene

Post-translational modifications for TSC22D4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TSC22D4 Gene

No data available for DME Specific Peptides for TSC22D4 Gene

Domains & Families for TSC22D4 Gene

Gene Families for TSC22D4 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted secreted proteins
  • Transcription factors

Protein Domains for TSC22D4 Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TSC22D4 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y3Q8

UniProtKB/Swiss-Prot:

T22D4_HUMAN :
  • Belongs to the TSC-22/Dip/Bun family.
Family:
  • Belongs to the TSC-22/Dip/Bun family.
genes like me logo Genes that share domains with TSC22D4: view

Function for TSC22D4 Gene

Molecular function for TSC22D4 Gene

UniProtKB/Swiss-Prot Function:
Transcriptional repressor.

Phenotypes From GWAS Catalog for TSC22D4 Gene

Gene Ontology (GO) - Molecular Function for TSC22D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM 19274049
GO:0003700 DNA binding transcription factor activity IEA --
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with TSC22D4: view
genes like me logo Genes that share phenotypes with TSC22D4: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TSC22D4 Gene

Localization for TSC22D4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSC22D4 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TSC22D4 gene
Compartment Confidence
nucleus 4
cytosol 4

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for TSC22D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with TSC22D4: view

Pathways & Interactions for TSC22D4 Gene

SuperPathways for TSC22D4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSC22D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription by RNA polymerase II IEA --
GO:0045892 negative regulation of transcription, DNA-templated NAS 10488076
GO:0070236 negative regulation of activation-induced cell death of T cells IBA --
genes like me logo Genes that share ontologies with TSC22D4: view

No data available for Pathways by source and SIGNOR curated interactions for TSC22D4 Gene

Drugs & Compounds for TSC22D4 Gene

No Compound Related Data Available

Transcripts for TSC22D4 Gene

mRNA/cDNA for TSC22D4 Gene

Unigene Clusters for TSC22D4 Gene

TSC22 domain family, member 4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSC22D4 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c
SP1: - - - - - -
SP2: - - - - - -
SP3: - -
SP4: -
SP5:
SP6:
SP7: -
SP8: -

Relevant External Links for TSC22D4 Gene

GeneLoc Exon Structure for
TSC22D4
ECgene alternative splicing isoforms for
TSC22D4

Expression for TSC22D4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSC22D4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TSC22D4 Gene

This gene is overexpressed in Whole Blood (x4.2).

Protein differential expression in normal tissues from HIPED for TSC22D4 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (13.3) and NK cells (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TSC22D4 Gene



Protein tissue co-expression partners for TSC22D4 Gene

NURSA nuclear receptor signaling pathways regulating expression of TSC22D4 Gene:

TSC22D4

SOURCE GeneReport for Unigene cluster for TSC22D4 Gene:

Hs.469798

Evidence on tissue expression from TISSUES for TSC22D4 Gene

  • Skin(4.4)
  • Blood(4.2)
  • Lung(4.2)
  • Liver(4.1)
  • Nervous system(3.9)
genes like me logo Genes that share expression patterns with TSC22D4: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSC22D4 Gene

Orthologs for TSC22D4 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSC22D4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSC22D4 34 33
  • 99.49 (n)
OneToOne
dog
(Canis familiaris)
Mammalia TSC22D4 34 33
  • 88.1 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tsc22d4 33
  • 85.27 (n)
mouse
(Mus musculus)
Mammalia Tsc22d4 16 34 33
  • 84.93 (n)
cow
(Bos Taurus)
Mammalia TSC22D4 34
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TSC22D4 34
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 8 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii TSC22D4 34
  • 26 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta bun 34
  • 9 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C30G4.7 34
  • 34 (a)
ManyToMany
T18D3.7 34
  • 26 (a)
ManyToMany
Species where no ortholog for TSC22D4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TSC22D4 Gene

ENSEMBL:
Gene Tree for TSC22D4 (if available)
TreeFam:
Gene Tree for TSC22D4 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for TSC22D4: view image

Paralogs for TSC22D4 Gene

Paralogs for TSC22D4 Gene

(3) SIMAP similar genes for TSC22D4 Gene using alignment to 5 proteins:

  • T22D4_HUMAN
  • A8MWR6_HUMAN
  • H7BZ77_HUMAN
  • H7C0M8_HUMAN
  • Q8IV54_HUMAN
genes like me logo Genes that share paralogs with TSC22D4: view

Variants for TSC22D4 Gene

Sequence variations from dbSNP and Humsavar for TSC22D4 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
VAR_036284 A breast cancer sample p.Val329Met
rs1000076772 -- 100,468,996(-) C/A intron_variant
rs1000131233 -- 100,474,997(-) C/G intron_variant
rs1000423470 -- 100,474,864(-) C/A intron_variant
rs1000500983 -- 100,477,085(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TSC22D4 Gene

Variant ID Type Subtype PubMed ID
esv2734888 CNV deletion 23290073
nsv518432 CNV loss 19592680
nsv527050 CNV loss 19592680
nsv527107 CNV loss 19592680
nsv831071 CNV loss 17160897
nsv951385 CNV deletion 24416366

Variation tolerance for TSC22D4 Gene

Residual Variation Intolerance Score: 62.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.41; 42.54% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TSC22D4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSC22D4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSC22D4 Gene

Disorders for TSC22D4 Gene

Additional Disease Information for TSC22D4

No disorders were found for TSC22D4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSC22D4 Gene

Publications for TSC22D4 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 4 58
  3. Transforming growth factor-beta-stimulated clone-22 is a member of a family of leucine zipper proteins that can homo- and heterodimerize and has transcriptional repressor activity. (PMID: 10488076) Kester HA … van der Burg B (The Journal of biological chemistry 1999) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor. (PMID: 27229929) Daakour S … Twizere JC (BMC cancer 2016) 3 58

Products for TSC22D4 Gene

Sources for TSC22D4 Gene

Content
Loading form....