Aliases for TSC22D1-AS1 Gene

Subcategory (RNA class) for TSC22D1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for TSC22D1-AS1 Gene

  • TSC22D1 Antisense RNA 1 2 3 5
  • TSC22D1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG013393 92
  • Lnc-SERP2-17 168
  • TSC22D1-AS1 2

External Ids for TSC22D1-AS1 Gene

Previous GeneCards Identifiers for TSC22D1-AS1 Gene

  • GC13P045151

Summaries for TSC22D1-AS1 Gene

GeneCards Summary for TSC22D1-AS1 Gene

TSC22D1-AS1 (TSC22D1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TSC22D1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TSC22D1-AS1 Gene

Genomics for TSC22D1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TSC22D1-AS1 Gene

Promoters and enhancers for TSC22D1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J044571 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -1.1 -1092 10.4 HNRNPK ZNF217 EP300 CTCF ZSCAN5C NRF1 MYC POLR2G PHF8 FOS TSC22D1 TSC22D1-AS1 RN7SL49P GPALPP1 SLC25A30-AS1 COG3 SMARCE1P5 ENOX1 NUFIP1 lnc-SMIM2-5
GH13J044567 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.4 -8.6 -8592 0.2 IKZF3 TSC22D1 TSC22D1-AS1 lnc-SMIM2-5 lnc-SMIM2-6
GH13J044560 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.4 -14.2 -14184 1.9 TSC22D1-AS1 lnc-SMIM2-5 TSC22D1 lnc-SMIM2-6
GH13J044564 Enhancer 0.5 ENCODE dbSUPER 0.4 -10.8 -10759 1.4 NR2F1 PRDM1 lnc-SMIM2-5 TSC22D1 TSC22D1-AS1 lnc-SMIM2-6
GH13J044568 Promoter 0.4 Ensembl 0.4 -7.9 -7892 0.4 ZNF133 TSC22D1 TSC22D1-AS1 lnc-SMIM2-5 lnc-SMIM2-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TSC22D1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TSC22D1-AS1 Gene

Genomic Locations for TSC22D1-AS1 Gene
chr13:44,575,893-44,580,432
(GRCh38/hg38)
Size:
4,540 bases
Orientation:
Plus strand
chr13:45,150,032-45,154,568
(GRCh37/hg19)
Size:
4,537 bases
Orientation:
Plus strand

Genomic View for TSC22D1-AS1 Gene

Genes around TSC22D1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSC22D1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSC22D1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSC22D1-AS1 Gene

Proteins for TSC22D1-AS1 Gene

Post-translational modifications for TSC22D1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSC22D1-AS1 Gene

Domains & Families for TSC22D1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TSC22D1-AS1 Gene

Function for TSC22D1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSC22D1-AS1 Gene

Localization for TSC22D1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSC22D1-AS1 Gene

Pathways & Interactions for TSC22D1-AS1 Gene

PathCards logo

SuperPathways for TSC22D1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TSC22D1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TSC22D1-AS1 Gene

Drugs & Compounds for TSC22D1-AS1 Gene

No Compound Related Data Available

Transcripts for TSC22D1-AS1 Gene

mRNA/cDNA for TSC22D1-AS1 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSC22D1-AS1 Gene

No ASD Table

Relevant External Links for TSC22D1-AS1 Gene

GeneLoc Exon Structure for
TSC22D1-AS1

Expression for TSC22D1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSC22D1-AS1 Gene

mRNA expression in normal human tissues for TSC22D1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TSC22D1-AS1

SOURCE GeneReport for Unigene cluster for TSC22D1-AS1 Gene:

Hs.624196
genes like me logo Genes that share expression patterns with TSC22D1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSC22D1-AS1 Gene

Orthologs for TSC22D1-AS1 Gene

Evolution for TSC22D1-AS1 Gene

ENSEMBL:
Gene Tree for TSC22D1-AS1 (if available)
TreeFam:
Gene Tree for TSC22D1-AS1 (if available)

No data available for Orthologs for TSC22D1-AS1 Gene

Paralogs for TSC22D1-AS1 Gene

No data available for Paralogs for TSC22D1-AS1 Gene

Variants for TSC22D1-AS1 Gene

Additional dbSNP identifiers (rs#s) for TSC22D1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TSC22D1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1124673 CNV duplication 24896259

Additional Variant Information for TSC22D1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSC22D1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TSC22D1-AS1 Gene

Disorders for TSC22D1-AS1 Gene

Additional Disease Information for TSC22D1-AS1

No disorders were found for TSC22D1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSC22D1-AS1 Gene

Publications for TSC22D1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for TSC22D1-AS1 Gene

Sources for TSC22D1-AS1 Gene