Aliases for TRX-CAT1-3 Gene

Subcategory (RNA class) for TRX-CAT1-3 Gene

tRNA

Number of RNA Genes sources:

4 / 17

Aliases for TRX-CAT1-3 Gene

  • TRNA-IMet (Anticodon CAT) 1-3 2 3
  • TRNA-IMet-CAT-1-3 2 3 162
  • Transfer RNA Initiator Methionine (CAT) 1-4 2 3
  • Transfer RNA Methionine 6 (Anticodon CAU) 2 3
  • Transfer RNA-IMet (CAT) 1-4 2 3
  • Transfer RNA-IMet (CAT) 1-3 2 3
  • TRNA-IMet-CAT-1-4 3 162
  • TRX-CAT1-4 2 3
  • TRNA-IMet-CAT-1-6 162
  • TRNA-IMet-CAT-1-8 162
  • TRNA-IMet-CAT-1-1 162
  • TRNA-IMet-CAT-1-7 162
  • TRNA-IMet-CAT-1-2 162
  • TRNA-IMet-CAT-1-5 162
  • TRX-CAT1-7 2
  • TRX-CAT1-2 2
  • TRX-CAT1-8 2
  • TRX-CAT1-1 2
  • TRX-CAT1-5 2
  • TRX-CAT1-3 2
  • TRX-CAT1-6 2
  • RF00005 168
  • 6EK0_S6 167
  • 6QZP_S6 167
  • 4V6X_BC 167
  • 6Y57_B4 167
  • 5T2C_An 167
  • 4UG0_S6 167
  • TRNAM6 3
  • 6FEC_N 167
  • 4KZZ_j 167

External Ids for TRX-CAT1-3 Gene

Previous HGNC Symbols for TRX-CAT1-3 Gene

  • TRNAM6
  • TRX-CAT1-4

Previous GeneCards Identifiers for TRX-CAT1-3 Gene

  • GC06P026289
  • GC06P026324
  • GC06M026795
  • GC06M026836
  • GC06M026995
  • GC06M027174
  • GC06M026494
  • GC06M026513
  • GC06M026544
  • GC06M026549
  • GC06M026605
  • GC06M026647
  • GC06M026685
  • GC06M026753

Summaries for TRX-CAT1-3 Gene

GeneCards Summary for TRX-CAT1-3 Gene

TRX-CAT1-3 (TRNA-IMet (Anticodon CAT) 1-3) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRX-CAT1-3 Gene

Additional gene information for TRX-CAT1-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRX-CAT1-3 Gene

Genomics for TRX-CAT1-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRX-CAT1-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J026309 Promoter/Enhancer 1.6 ENCODE CraniofacialAtlas dbSUPER 600.7 +1.4 1354 4.9 ZNF221 ARHGAP35 CREB1 GATAD2A TEAD4 ZNF629 TFE3 ZNF512 LEF1 IKZF1 TRQ-TTG3-1 TRQ-TTG3-2 TRS-TGA3-1 TRX-CAT1-3 piR-30961-003 piR-33437-004 ABT1 ZNF322 BTN2A2 BTN2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRX-CAT1-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRX-CAT1-3 Gene

Genomic Locations for TRX-CAT1-3 Gene
chr6:26,313,124-26,313,195
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr6:26,313,352-26,313,423
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRX-CAT1-3 Gene

Genes around TRX-CAT1-3 on UCSC Golden Path with GeneCards custom track
TRX-CAT1-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRX-CAT1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRX-CAT1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRX-CAT1-3 Gene

Proteins for TRX-CAT1-3 Gene

Post-translational modifications for TRX-CAT1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRX-CAT1-3 Gene

Domains & Families for TRX-CAT1-3 Gene

Gene Families for TRX-CAT1-3 Gene

genes like me logo Genes that share domains with TRX-CAT1-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRX-CAT1-3 Gene

Function for TRX-CAT1-3 Gene

Phenotypes From GWAS Catalog for TRX-CAT1-3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRX-CAT1-3 Gene

Localization for TRX-CAT1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRX-CAT1-3 Gene

Pathways & Interactions for TRX-CAT1-3 Gene

PathCards logo

SuperPathways for TRX-CAT1-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRX-CAT1-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRX-CAT1-3 Gene

Drugs & Compounds for TRX-CAT1-3 Gene

No Compound Related Data Available

Transcripts for TRX-CAT1-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRX-CAT1-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000030BAD5_9606 tRNA 72 4

HGNC: 12318, 34574, 34599, 34655, 34818,

GtRNAdb: tRNA-iMet-CAT-1-1:CM000663.1:153643726-153643797, tRNA-iMet-CAT-1-1:CM000663.2:153671250-153671321, tRNA-iMet-CAT-1-2:CM000668.1:26286754-26286825, tRNA-iMet-CAT-1-2:CM000668.2:26286526-26286597, tRNA-iMet-CAT-1-3:CM000668.1:26313352-26313423,

Rfam: RF00005,

ENA: View 11 records in RNAcentral

URS0000326EAC_9606 tRNA 72 2

PDBe: 4KZZ_j, 4UG0_S6, 4V6X_BC, 5T2C_An, 6EK0_S6,

ENA: K00328.1:1..75:tRNA,

TRX-CAT1-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRX-CAT1-3 Gene

No ASD Table

Relevant External Links for TRX-CAT1-3 Gene

GeneLoc Exon Structure for
TRX-CAT1-3

No data available for mRNA/cDNA for TRX-CAT1-3 Gene

Expression for TRX-CAT1-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRX-CAT1-3 Gene

Orthologs for TRX-CAT1-3 Gene

No data available for Orthologs and Evolution for TRX-CAT1-3 Gene

Paralogs for TRX-CAT1-3 Gene

No data available for Paralogs for TRX-CAT1-3 Gene

Variants for TRX-CAT1-3 Gene

Additional Variant Information for TRX-CAT1-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRX-CAT1-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRX-CAT1-3 Gene

Disorders for TRX-CAT1-3 Gene

No disorders were found for TRX-CAT1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRX-CAT1-3 Gene

Publications for TRX-CAT1-3 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

Products for TRX-CAT1-3 Gene

Sources for TRX-CAT1-3 Gene