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Aliases for TRX-CAT1-2 Gene

Subcategory (RNA class) for TRX-CAT1-2 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRX-CAT1-2 Gene

  • Transfer RNA-IMet (CAT) 1-2 2 3
  • Transfer RNA Methionine Initiator 2 (Anticodon CAU) 2 3
  • Transfer RNA Initiator Methionine (CAT) 1-3 2 3
  • Transfer RNA Methionine 1 (Anticodon CAU) 2 3
  • TRNA Methionine 1 (Anticodon CAU) 2 3
  • TRNA Methionine Initiator 2 2 3
  • Transfer RNA-IMet (CAT) 1-3 2 3
  • Transfer RNA Methionine Initiator 2 2
  • TRNA Methionine 1 2
  • TRNA-IMet-CAT-1-3 3
  • TRX-CAT1-3 3
  • TRNAMI2 3
  • RNTMI1 3
  • RNTMI2 3
  • RNTMT1 3
  • TRNAM1 3
  • TRMI2 3
  • TRM1 3
  • TRM2 3

External Ids for TRX-CAT1-2 Gene

Previous HGNC Symbols for TRX-CAT1-2 Gene

  • TRM1
  • TRNAMI2
  • TRM2
  • TRMI2
  • TRNAM1
  • TRX-CAT1-3

Previous GeneCards Identifiers for TRX-CAT1-2 Gene

  • GC17M082494
  • GC06P026396
  • GC06P026453
  • GC06P026514
  • GC06P026810
  • GC06P026944

Summaries for TRX-CAT1-2 Gene

GeneCards Summary for TRX-CAT1-2 Gene

TRX-CAT1-2 (Transfer RNA-IMet (CAT) 1-2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRX-CAT1-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRX-CAT1-2 Gene

Genomics for TRX-CAT1-2 Gene

GeneHancer (GH) Regulatory Elements for TRX-CAT1-2 Gene

Promoters and enhancers for TRX-CAT1-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I026283 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.4 -1419 3.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 HIST1H4H TRX-CAT1-2 PIR50839 LOC105374985 PIR40221 PIR54542 ABT1 HMGN4 BTN2A3P BTN2A1
GH06I026287 Enhancer 0.7 dbSUPER 550.8 +1.6 1612 0.9 ZNF211 ZNF507 ZNF280A ZNF316 CBX5 NFE2 TRIM24 MAFK NFE2L2 MITF PIR54542 TRX-CAT1-2 HIST1H3E HIST1H4H PIR61890
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRX-CAT1-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRX-CAT1-2 Gene

Genomic Locations for TRX-CAT1-2 Gene
chr6:26,286,526-26,286,597
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:26,286,754-26,286,825
(GRCh37/hg19)

Genomic View for TRX-CAT1-2 Gene

Genes around TRX-CAT1-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRX-CAT1-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRX-CAT1-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRX-CAT1-2 Gene

Proteins for TRX-CAT1-2 Gene

Post-translational modifications for TRX-CAT1-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRX-CAT1-2 Gene

Domains & Families for TRX-CAT1-2 Gene

Gene Families for TRX-CAT1-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRX-CAT1-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRX-CAT1-2 Gene

Function for TRX-CAT1-2 Gene

Phenotypes From GWAS Catalog for TRX-CAT1-2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRX-CAT1-2 Gene

Localization for TRX-CAT1-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRX-CAT1-2 Gene

Pathways & Interactions for TRX-CAT1-2 Gene

SuperPathways for TRX-CAT1-2 Gene

No Data Available

Interacting Proteins for TRX-CAT1-2 Gene

Gene Ontology (GO) - Biological Process for TRX-CAT1-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRX-CAT1-2 Gene

Drugs & Compounds for TRX-CAT1-2 Gene

No Compound Related Data Available

Transcripts for TRX-CAT1-2 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRX-CAT1-2 Gene

No ASD Table

Relevant External Links for TRX-CAT1-2 Gene

GeneLoc Exon Structure for
TRX-CAT1-2
ECgene alternative splicing isoforms for
TRX-CAT1-2

No data available for mRNA/cDNA for TRX-CAT1-2 Gene

Expression for TRX-CAT1-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRX-CAT1-2 Gene

Orthologs for TRX-CAT1-2 Gene

No data available for Orthologs and Evolution for TRX-CAT1-2 Gene

Paralogs for TRX-CAT1-2 Gene

No data available for Paralogs for TRX-CAT1-2 Gene

Variants for TRX-CAT1-2 Gene

Additional Variant Information for TRX-CAT1-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRX-CAT1-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRX-CAT1-2 Gene

Disorders for TRX-CAT1-2 Gene

No disorders were found for TRX-CAT1-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRX-CAT1-2 Gene

Publications for TRX-CAT1-2 Gene

  1. A cluster of transfer RNA genes (TRM1, TRR3, and TRAN) on the short arm of human chromosome 6. (PMID: 8661117) Buckland RA … Sealey PG (Genomics 1996) 2 3 58
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  3. Two nonallelic tRNAiMet genes are located in the p23 leads to q12 region of human chromosome 6. (PMID: 6308668) Naylor SL … Zasloff M (Proceedings of the National Academy of Sciences of the United States of America 1983) 3 58
  4. Comparative analysis of human chromosomal segments bearing nonallelic dispersed tRNAimet genes. (PMID: 6261953) Santos T … Zasloff M (Cell 1981) 3 58

Products for TRX-CAT1-2 Gene

Sources for TRX-CAT1-2 Gene

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