TRV-CAC6-1 Gene (RNA Gene)

TRNA-Val (Anticodon CAC) 6-1

GC06M027206
GIFtS:
6
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Aliases for TRV-CAC6-1 Gene

Subcategory (RNA class) for TRV-CAC6-1 Gene

tRNA

Number of RNA Genes sources:

2 / 17

Aliases for TRV-CAC6-1 Gene

  • TRNA-Val (Anticodon CAC) 6-1 2 3
  • TRNA-Val-CAC-6-1 2 3 162
  • Transfer RNA Valine 28 (Anticodon CAC) 2 3
  • Transfer RNA-Val (CAC) 6-1 2 3
  • TRV-CAC6-1 2
  • TRNAV28 3

External Ids for TRV-CAC6-1 Gene

Previous HGNC Symbols for TRV-CAC6-1 Gene

  • TRNAV28

Summaries for TRV-CAC6-1 Gene

GeneCards Summary for TRV-CAC6-1 Gene

TRV-CAC6-1 (TRNA-Val (Anticodon CAC) 6-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRV-CAC6-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRV-CAC6-1 Gene

Genomics for TRV-CAC6-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRV-CAC6-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027205 Enhancer 0.7 ENCODE 600.7 +0.2 177 1.2 IKZF1 ZNF740 ZNF24 HDAC1 FOXJ2 EP300 MGA CBX3 ZXDB RUNX3 TRV-CAC6-1 POM121L2 ZNF391 BTN3A1 BTN3A2 ZNF602P TRI-AAT5-2 piR-36037-008 PRSS16 H2AC12
GH06J027187 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 0.4 +17.7 17685 2.2 RNF2 CREB1 CTCF TEAD4 PRDM10 LEF1 POLR2A JUND DDX20 PRDM1 BTN2A2 H2AC12 BTN3A2 ENSG00000261584 piR-36037-008 TRI-AAT5-2 TRV-CAC6-1 PRSS16
GH06J027176 Promoter/Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas 0.3 +28.6 28564 3.1 ZNF221 RNF2 HNRNPL CREB1 CTCF PRDM10 ZNF629 ZNF512 IKZF1 NFKBIZ TRI-AAT5-2 piR-36037-008 piR-33415-004 BTN3A2 ZKSCAN8 BTN2A2 ABT1 BTN2A1 ZNF204P HMGN4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRV-CAC6-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRV-CAC6-1 Gene

Genomic Locations for TRV-CAC6-1 Gene
chr6:27,206,088-27,206,160
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr6:27,173,867-27,173,939
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRV-CAC6-1 Gene

Genes around TRV-CAC6-1 on UCSC Golden Path with GeneCards custom track
TRV-CAC6-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRV-CAC6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRV-CAC6-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRV-CAC6-1 Gene

Proteins for TRV-CAC6-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRV-CAC6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRV-CAC6-1 Gene

Domains & Families for TRV-CAC6-1 Gene

Gene Families for TRV-CAC6-1 Gene

HGNC:
genes like me logo Genes that share domains with TRV-CAC6-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRV-CAC6-1 Gene

Function for TRV-CAC6-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRV-CAC6-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRV-CAC6-1 Gene

Localization for TRV-CAC6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRV-CAC6-1 Gene

Pathways & Interactions for TRV-CAC6-1 Gene

PathCards logo

SuperPathways for TRV-CAC6-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRV-CAC6-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRV-CAC6-1 Gene

Drugs & Compounds for TRV-CAC6-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRV-CAC6-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRV-CAC6-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000732DD4_9606 tRNA 73 3

HGNC: 34936,

GtRNAdb: tRNA-Val-CAC-6-1:CM000668.1:27173867-27173939, tRNA-Val-CAC-6-1:CM000668.2:27206088-27206160,

ENA: HG984121.1:1..73:tRNA,

TRV-CAC6-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRV-CAC6-1 Gene

No ASD Table

Relevant External Links for TRV-CAC6-1 Gene

GeneLoc Exon Structure for
TRV-CAC6-1

No data available for mRNA/cDNA for TRV-CAC6-1 Gene

Expression for TRV-CAC6-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRV-CAC6-1 Gene

Orthologs for TRV-CAC6-1 Gene

No data available for Orthologs and Evolution for TRV-CAC6-1 Gene

Paralogs for TRV-CAC6-1 Gene

No data available for Paralogs for TRV-CAC6-1 Gene

Variants for TRV-CAC6-1 Gene

Additional Variant Information for TRV-CAC6-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRV-CAC6-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRV-CAC6-1 Gene

Disorders for TRV-CAC6-1 Gene

No disorders were found for TRV-CAC6-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRV-CAC6-1 Gene

Publications for TRV-CAC6-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRV-CAC6-1 Gene

Products for TRV-CAC6-1 Gene

Sources for TRV-CAC6-1 Gene