Aliases for TRV-AAC6-1 Gene

Subcategory (RNA class) for TRV-AAC6-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRV-AAC6-1 Gene

  • TRNA-Val (Anticodon AAC) 6-1 2 3
  • TRNA-Val-AAC-6-1 2 3 162
  • Transfer RNA Valine 18 (Anticodon AAC) 2 3
  • Transfer RNA-Val (AAC) 6-1 2 3
  • TRV-AAC6-1 2
  • TRNAV18 3
  • RF00005 168

External Ids for TRV-AAC6-1 Gene

Previous HGNC Symbols for TRV-AAC6-1 Gene

  • TRNAV18

Summaries for TRV-AAC6-1 Gene

GeneCards Summary for TRV-AAC6-1 Gene

TRV-AAC6-1 (TRNA-Val (Anticodon AAC) 6-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRV-AAC6-1 Gene

Additional gene information for TRV-AAC6-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRV-AAC6-1 Gene

Genomics for TRV-AAC6-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRV-AAC6-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028735 Enhancer 1.1 ENCODE dbSUPER 600.7 +0.1 127 0.4 HNRNPL ZNF629 JUND ZSCAN4 PKNOX1 ZNF24 ZNF740 BRD9 ZNF501 HDAC1 TRV-AAC6-1 TRIM27 ZSCAN12 ZSCAN23 ZKSCAN8 SUMO2P1 ZNF603P RPSAP2 ZBED9
GH06J028737 Enhancer 0.8 ENCODE dbSUPER 0.7 -2.5 -2463 1.1 EZH2 MGA HMBOX1 EGR1 ZSCAN29 NFRKB ZBTB17 EP400 ZFHX2 TBP TRIM27 ZNF602P ZFP57 TRV-AAC6-1 piR-30855-002 ZBED9
GH06J028742 Enhancer 1.1 ENCODE dbSUPER 0.4 -7.4 -7389 0.4 GATAD2A HNRNPL TEAD4 PRDM10 JUND PRDM1 MTA2 PHF21A PATZ1 BRD9 TRR-CCG1-1 piR-30855-002 piR-54341-002 ZSCAN12 ZSCAN23 ZKSCAN8 SUMO2P1 GPX5 ZNF603P ZFP57
GH06J028744 Enhancer 0.7 ENCODE 0.4 -6.6 -6589 0.1 JUND MTA2 ZNF24 CTBP1 HDAC2 FOSL1 MIER1 BCOR TBP ZNF335 TRR-CCG1-1 piR-30855-002 piR-54341-002 TRIM27 GPX5 TRV-AAC6-1 ZBED9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRV-AAC6-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRV-AAC6-1 Gene

Genomic Locations for TRV-AAC6-1 Gene
chr6:28,735,429-28,735,500
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr6:28,703,206-28,703,277
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRV-AAC6-1 Gene

Genes around TRV-AAC6-1 on UCSC Golden Path with GeneCards custom track
TRV-AAC6-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRV-AAC6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRV-AAC6-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRV-AAC6-1 Gene

Proteins for TRV-AAC6-1 Gene

Post-translational modifications for TRV-AAC6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRV-AAC6-1 Gene

Domains & Families for TRV-AAC6-1 Gene

Gene Families for TRV-AAC6-1 Gene

genes like me logo Genes that share domains with TRV-AAC6-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRV-AAC6-1 Gene

Function for TRV-AAC6-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRV-AAC6-1 Gene

Localization for TRV-AAC6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRV-AAC6-1 Gene

Pathways & Interactions for TRV-AAC6-1 Gene

PathCards logo

SuperPathways for TRV-AAC6-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRV-AAC6-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRV-AAC6-1 Gene

Drugs & Compounds for TRV-AAC6-1 Gene

No Compound Related Data Available

Transcripts for TRV-AAC6-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRV-AAC6-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000071ED2F_9606 tRNA 72 4

HGNC: 34740,

GtRNAdb: tRNA-Val-AAC-6-1:CM000668.1:28703206-28703277, tRNA-Val-AAC-6-1:CM000668.2:28735429-28735500,

Rfam: RF00005,

ENA: HG984109.1:1..72:tRNA,

URS00006CFACA_9606 tRNA 72 1

Rfam: RF00005,

TRV-AAC6-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRV-AAC6-1 Gene

No ASD Table

Relevant External Links for TRV-AAC6-1 Gene

GeneLoc Exon Structure for
TRV-AAC6-1

No data available for mRNA/cDNA for TRV-AAC6-1 Gene

Expression for TRV-AAC6-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRV-AAC6-1 Gene

Orthologs for TRV-AAC6-1 Gene

No data available for Orthologs and Evolution for TRV-AAC6-1 Gene

Paralogs for TRV-AAC6-1 Gene

No data available for Paralogs for TRV-AAC6-1 Gene

Variants for TRV-AAC6-1 Gene

Additional Variant Information for TRV-AAC6-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRV-AAC6-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRV-AAC6-1 Gene

Disorders for TRV-AAC6-1 Gene

No disorders were found for TRV-AAC6-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRV-AAC6-1 Gene

Publications for TRV-AAC6-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

Products for TRV-AAC6-1 Gene

Sources for TRV-AAC6-1 Gene