Aliases for TRT-CGT3-1 Gene

Subcategory (RNA class) for TRT-CGT3-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRT-CGT3-1 Gene

  • TRNA-Thr (Anticodon CGT) 3-1 2 3
  • Transfer RNA Threonine 17 (Anticodon CGU) 2 3
  • Transfer RNA-Thr (CGT) 3-1 2 3
  • TRNA-Thr-CGT-3-1 3 167
  • TRT-CGT3-1 2
  • TRNAT17 3
  • RF00005 174

External Ids for TRT-CGT3-1 Gene

Previous HGNC Symbols for TRT-CGT3-1 Gene

  • TRNAT17

Previous GeneCards Identifiers for TRT-CGT3-1 Gene

  • GC06M028649
  • GC06M028652
  • GC06M028659
  • GC06M028665
  • GC06M028655
  • GC06M028657

Summaries for TRT-CGT3-1 Gene

GeneCards Summary for TRT-CGT3-1 Gene

TRT-CGT3-1 (TRNA-Thr (Anticodon CGT) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRT-CGT3-1 Gene

Additional gene information for TRT-CGT3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRT-CGT3-1 Gene

Genomics for TRT-CGT3-1 Gene

GeneHancer (GH) Regulatory Elements for TRT-CGT3-1 Gene

Promoters and enhancers for TRT-CGT3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028647 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 750.6 -0.5 -493 2.1 GTF3C2 ZNF24 ZBTB40 ZBTB6 CTBP1 CREB1 MIXL1 ZNF362 POU5F1 TEAD4 TRT-CGT3-1 ZKSCAN8 ZSCAN12 ZKSCAN3 ZKSCAN4 RN7SL471P OR2H5P TMEM183AP1 ZSCAN9 ZSCAN23
GH06J028643 Enhancer 0.9 ENCODE 0.6 +4.7 4691 0.5 GTF3C2 SIN3A ZNF24 ZBTB40 ZBTB6 ATF1 ZNF217 CREB1 MIXL1 ZNF362 TRA-TGC2-1 piR-36225-005 ZSCAN12 ZSCAN23 ZKSCAN8 ZSCAN26 RN7SL471P ZKSCAN3 OR2H5P TMEM183AP1
GH06J028644 Enhancer 0.5 ENCODE 0.6 +4.3 4271 0 ZBTB6 ZSCAN21 SCRT2 OSR2 SCRT1 ZNF335 ZBTB33 TRA-TGC2-1 piR-36225-005 GPX5 TRT-CGT3-1 ENSG00000287279 LOC105374996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRT-CGT3-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRT-CGT3-1 Gene

Genomic Locations for TRT-CGT3-1 Gene
chr6:28,648,207-28,648,280
(GRCh38/hg38)
Size:
74 bases
Orientation:
Minus strand
chr6:28,615,984-28,616,057
(GRCh37/hg19)
Size:
74 bases
Orientation:
Minus strand

Genomic View for TRT-CGT3-1 Gene

Genes around TRT-CGT3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRT-CGT3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRT-CGT3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRT-CGT3-1 Gene

Proteins for TRT-CGT3-1 Gene

Post-translational modifications for TRT-CGT3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRT-CGT3-1 Gene

Domains & Families for TRT-CGT3-1 Gene

Gene Families for TRT-CGT3-1 Gene

genes like me logo Genes that share domains with TRT-CGT3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRT-CGT3-1 Gene

Function for TRT-CGT3-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRT-CGT3-1 Gene

Localization for TRT-CGT3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRT-CGT3-1 Gene

Pathways & Interactions for TRT-CGT3-1 Gene

PathCards logo

SuperPathways for TRT-CGT3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRT-CGT3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRT-CGT3-1 Gene

Drugs & Compounds for TRT-CGT3-1 Gene

No Compound Related Data Available

Transcripts for TRT-CGT3-1 Gene

mRNA/cDNA for TRT-CGT3-1 Gene

(1) RNACentral transcripts :
(1) ENA transcripts :
(2) GtRNAdb transcripts :
(1) Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRT-CGT3-1 Gene

No ASD Table

Relevant External Links for TRT-CGT3-1 Gene

GeneLoc Exon Structure for
TRT-CGT3-1
ECgene alternative splicing isoforms for
TRT-CGT3-1

Expression for TRT-CGT3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRT-CGT3-1 Gene

Orthologs for TRT-CGT3-1 Gene

No data available for Orthologs and Evolution for TRT-CGT3-1 Gene

Paralogs for TRT-CGT3-1 Gene

No data available for Paralogs for TRT-CGT3-1 Gene

Variants for TRT-CGT3-1 Gene

Additional Variant Information for TRT-CGT3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRT-CGT3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRT-CGT3-1 Gene

Disorders for TRT-CGT3-1 Gene

No disorders were found for TRT-CGT3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRT-CGT3-1 Gene

Publications for TRT-CGT3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 56

No data available for External Links for TRT-CGT3-1 Gene

Products for TRT-CGT3-1 Gene

Sources for TRT-CGT3-1 Gene