Aliases for TRT-CGT2-1 Gene

Subcategory (RNA class) for TRT-CGT2-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRT-CGT2-1 Gene

  • TRNA-Thr (Anticodon CGT) 2-1 2 3
  • TRNA-Thr-CGT-2-1 2 3 162
  • Transfer RNA Threonine 6 (Anticodon CGU) 2 3
  • Transfer RNA-Thr (CGT) 2-1 2 3
  • TRT-CGT2-1 2
  • RF00005 168
  • TRNAT6 3

External Ids for TRT-CGT2-1 Gene

Previous HGNC Symbols for TRT-CGT2-1 Gene

  • TRNAT6

Summaries for TRT-CGT2-1 Gene

GeneCards Summary for TRT-CGT2-1 Gene

TRT-CGT2-1 (TRNA-Thr (Anticodon CGT) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRT-CGT2-1 Gene

Additional gene information for TRT-CGT2-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRT-CGT2-1 Gene

Genomics for TRT-CGT2-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRT-CGT2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014283 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas 600.7 -0.5 -530 3.6 ZNF221 SP1 CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 SOX13 TRT-CGT2-1 PKD1P3 NPIPA3 NPIPP1 NPIPA1 LOC100505915 NPIPA2 PARN PKD1P6 BFAR
GH16J014289 Enhancer 0.8 ENCODE 0.7 +4.0 4026 0.1 CTCF FOXA1 ZNF143 PKNOX1 REST RAD21 IRF2 FOXK2 SCRT2 CBX3 PARN TRT-CGT2-1 MIR193BHG MRTFB
GH16J014299 Enhancer 0.9 Ensembl ENCODE 0.4 +13.8 13807 0.6 GATAD2A CTCF ZBTB33 RCOR2 SCRT2 HDAC2 FOXA2 KAT7 SCRT1 SAP130 MIR193BHG TRT-CGT2-1 MRTFB PARN
GH16J014278 Enhancer 0.7 Ensembl ENCODE 0.4 -6.9 -6892 0.4 FOXA2 TFAP4 ARID4B HLF FOXA3 MLX MIXL1 MZF1 lnc-PARN-11 MIR193B TRT-CGT2-1 MRTFB PARN
GH16J014293 Enhancer 0.4 Ensembl 0.4 +7.7 7708 0.4 NFIC NFIB NFIA MIR193BHG TRT-CGT2-1 MRTFB PARN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRT-CGT2-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRT-CGT2-1 Gene

Genomic Locations for TRT-CGT2-1 Gene
chr16:14,285,893-14,285,964
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr16:14,379,750-14,379,821
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRT-CGT2-1 Gene

Genes around TRT-CGT2-1 on UCSC Golden Path with GeneCards custom track
TRT-CGT2-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRT-CGT2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRT-CGT2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRT-CGT2-1 Gene

Proteins for TRT-CGT2-1 Gene

Post-translational modifications for TRT-CGT2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRT-CGT2-1 Gene

Domains & Families for TRT-CGT2-1 Gene

Gene Families for TRT-CGT2-1 Gene

genes like me logo Genes that share domains with TRT-CGT2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRT-CGT2-1 Gene

Function for TRT-CGT2-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRT-CGT2-1 Gene

Localization for TRT-CGT2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRT-CGT2-1 Gene

Pathways & Interactions for TRT-CGT2-1 Gene

PathCards logo

SuperPathways for TRT-CGT2-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRT-CGT2-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRT-CGT2-1 Gene

Drugs & Compounds for TRT-CGT2-1 Gene

No Compound Related Data Available

Transcripts for TRT-CGT2-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRT-CGT2-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001D9AFB_9606 tRNA 72 4

HGNC: 34646,

GtRNAdb: tRNA-Thr-CGT-2-1:CM000678.1:14379750-14379821, tRNA-Thr-CGT-2-1:CM000678.2:14285893-14285964,

Rfam: RF00005,

ENA: HG984053.1:1..72:tRNA,

TRT-CGT2-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRT-CGT2-1 Gene

No ASD Table

Relevant External Links for TRT-CGT2-1 Gene

GeneLoc Exon Structure for
TRT-CGT2-1

No data available for mRNA/cDNA for TRT-CGT2-1 Gene

Expression for TRT-CGT2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRT-CGT2-1 Gene

Orthologs for TRT-CGT2-1 Gene

No data available for Orthologs and Evolution for TRT-CGT2-1 Gene

Paralogs for TRT-CGT2-1 Gene

No data available for Paralogs for TRT-CGT2-1 Gene

Variants for TRT-CGT2-1 Gene

Additional Variant Information for TRT-CGT2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRT-CGT2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRT-CGT2-1 Gene

Disorders for TRT-CGT2-1 Gene

No disorders were found for TRT-CGT2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRT-CGT2-1 Gene

Publications for TRT-CGT2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

Products for TRT-CGT2-1 Gene

Sources for TRT-CGT2-1 Gene