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TRT-AGT2-2 Gene(RNA Gene)

Transfer RNA-Thr (AGT) 2-2

GCID:
GC06M027684
GIFtS:
8
Genes Participants
UDN Logo

Aliases for TRT-AGT2-2 Gene

Subcategory (RNA class) for TRT-AGT2-2 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRT-AGT2-2 Gene

  • Transfer RNA-Thr (AGT) 2-2 2 3
  • Transfer RNA Threonine 15 (Anticodon AGU) 2 3
  • TRNA-Thr-AGT-2-2 3
  • TRNAT15 3

External Ids for TRT-AGT2-2 Gene

ORGUL Members for TRT-AGT2-2 Gene

Previous HGNC Symbols for TRT-AGT2-2 Gene

  • TRNAT15

Summaries for TRT-AGT2-2 Gene

GeneCards Summary for TRT-AGT2-2 Gene

TRT-AGT2-2 (Transfer RNA-Thr (AGT) 2-2) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRT-AGT2-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRT-AGT2-2 Gene

Genomics for TRT-AGT2-2 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for TRT-AGT2-2 Gene

Promoters and enhancers for TRT-AGT2-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06I027684 Enhancer 1.2 Ensembl ENCODE 550.8 +0.1 131 1.1 CLOCK FOXA2 ARNT ARID4B DMAP1 ZNF2 SLC30A9 ZNF766 ZNF213 E2F8 TRT-AGT2-2 ZSCAN12 ZNF204P PGBD1 ZSCAN23 ZSCAN26 ZNF391 ENSG00000271755 ZKSCAN8 ZSCAN9
GH06I027687 Enhancer 1.6 FANTOM5 Ensembl ENCODE 0.8 -3.2 -3214 2 MLX IRF4 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 TRI-AAT2-1 ZKSCAN8 ZSCAN23 ZKSCAN3 ZSCAN12 LINC00240 ZSCAN31 ENSG00000261839 ZNF603P ZNF391
GH06I027681 Enhancer 0.6 ENCODE 0.8 +3.3 3297 0.3 SMARCA5 DRAP1 CHD4 ZNF217 POLR3A IKZF1 NBN ZBTB33 IKZF2 EZH2 GC06M027682 TRV-AAC4-1 TRT-AGT2-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRT-AGT2-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRT-AGT2-2 Gene

Genomic Locations for TRT-AGT2-2 Gene
chr6:27,684,695-27,684,768
(GRCh38/hg38)
Size:
74 bases
Orientation:
Minus strand
chr6:27,652,474-27,652,547
(GRCh37/hg19)

Genomic View for TRT-AGT2-2 Gene

Genes around TRT-AGT2-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRT-AGT2-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRT-AGT2-2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRT-AGT2-2 Gene

Proteins for TRT-AGT2-2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRT-AGT2-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRT-AGT2-2 Gene

Domains & Families for TRT-AGT2-2 Gene

Gene Families for TRT-AGT2-2 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRT-AGT2-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRT-AGT2-2 Gene

Function for TRT-AGT2-2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRT-AGT2-2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRT-AGT2-2 Gene

Localization for TRT-AGT2-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRT-AGT2-2 Gene

Pathways & Interactions for TRT-AGT2-2 Gene

SuperPathways for TRT-AGT2-2 Gene

PathCards logo More details on SuperPathways for TRT-AGT2-2
No Data Available

Interacting Proteins for TRT-AGT2-2 Gene

Gene Ontology (GO) - Biological Process for TRT-AGT2-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRT-AGT2-2 Gene

Drugs & Compounds for TRT-AGT2-2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRT-AGT2-2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRT-AGT2-2 Gene

No ASD Table

Relevant External Links for TRT-AGT2-2 Gene

GeneLoc Exon Structure for
TRT-AGT2-2
ECgene alternative splicing isoforms for
TRT-AGT2-2

No data available for mRNA/cDNA for TRT-AGT2-2 Gene

Expression for TRT-AGT2-2 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRT-AGT2-2 Gene

Orthologs for TRT-AGT2-2 Gene

No data available for Orthologs and Evolution for TRT-AGT2-2 Gene

Paralogs for TRT-AGT2-2 Gene

No data available for Paralogs for TRT-AGT2-2 Gene

Variants for TRT-AGT2-2 Gene

Additional Variant Information for TRT-AGT2-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRT-AGT2-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRT-AGT2-2 Gene

Disorders for TRT-AGT2-2 Gene

No disorders were found for TRT-AGT2-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRT-AGT2-2 Gene

Publications for TRT-AGT2-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  2. Identity determinants of human tRNA(Ser): sequence elements necessary for serylation and maturation of a tRNA with a long extra arm. (PMID: 8344269) Achsel T … Gross HJ (The EMBO journal 1993) 3 58
  3. The first human genes for tRNA(ArgICG), tRNA(GlyUCC), and tRNA(ThrIGU) and more tRNA(Val) pseudogenes: expression and pre-tRNA maturation in HeLa cell-free extracts. (PMID: 1457046) Kaçar Y … Gross HJ (DNA and cell biology 1992) 3 58

Products for TRT-AGT2-2 Gene

Sources for TRT-AGT2-2 Gene

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