Aliases for TRT-AGT2-1 Gene

Subcategory (RNA class) for TRT-AGT2-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRT-AGT2-1 Gene

  • TRNA-Thr (Anticodon AGT) 2-1 2 3
  • TRNA-Thr-AGT-2-1 2 3 162
  • Transfer RNA Threonine 14 (Anticodon AGU) 2 3
  • Transfer RNA-Thr (AGT) 2-1 2 3
  • TRNA-Thr-AGT-2-2 162
  • TRT-AGT2-2 2
  • TRT-AGT2-1 2
  • TRNAT14 3
  • RF00005 168

External Ids for TRT-AGT2-1 Gene

Previous HGNC Symbols for TRT-AGT2-1 Gene

  • TRNAT14

Summaries for TRT-AGT2-1 Gene

GeneCards Summary for TRT-AGT2-1 Gene

TRT-AGT2-1 (TRNA-Thr (Anticodon AGT) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRT-AGT2-1 Gene

Additional gene information for TRT-AGT2-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRT-AGT2-1 Gene

Genomics for TRT-AGT2-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRT-AGT2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J026531 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 600.7 +0.1 90 1.8 GATAD2A TEAD4 PRDM10 ZNF629 SOX13 IKZF1 NFKBIZ ZNF692 RCOR2 ZNF7 TRT-AGT2-1 BTN2A1 HMGN4 BTN3A2 ABT1 BTN2A3P BTN2A2 ZNF322 ENSG00000261584 BTN1A1
GH06J026535 Enhancer 0.5 ENCODE dbSUPER 600.7 -1.1 -1098 0.2 KDM1A MXD3 TRT-AGT2-1 HMGN4 TRR-ACG1-2 BTN1A1
GH06J026534 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.3 -4290 5.4 ZNF221 ARHGAP35 CREB1 GATAD2A HNRNPL TEAD4 REST ZNF629 TFE3 ZNF512 HMGN4 MN298278 TRR-ACG1-2 TRV-CAC1-6 X17517 piR-33164-015 piR-41435-003 ENSG00000261584 BTN3A2 BTN2A1
GH06J026529 Enhancer 0.3 Ensembl 0.7 +3.4 3389 0.8 KDM1A ZNF24 BTN3A2 HMGN4 BTN1A1 BTN2A1 TRT-AGT2-1 LOC107986583
GH06J026527 Enhancer 0.2 Ensembl 0.7 +4.9 4889 1 HMGN4 BTN1A1 BTN2A1 BTN3A2 LINC00240 BTN3A3 LOC107986583 TRT-AGT2-1 HCG11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRT-AGT2-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRT-AGT2-1 Gene

Genomic Locations for TRT-AGT2-1 Gene
chr6:26,532,917-26,532,990
(GRCh38/hg38)
Size:
74 bases
Orientation:
Minus strand
chr6:26,533,145-26,533,218
(GRCh37/hg19)
Size:
74 bases
Orientation:
Minus strand

Genomic View for TRT-AGT2-1 Gene

Genes around TRT-AGT2-1 on UCSC Golden Path with GeneCards custom track
TRT-AGT2-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRT-AGT2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRT-AGT2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRT-AGT2-1 Gene

Proteins for TRT-AGT2-1 Gene

Post-translational modifications for TRT-AGT2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRT-AGT2-1 Gene

Domains & Families for TRT-AGT2-1 Gene

Gene Families for TRT-AGT2-1 Gene

genes like me logo Genes that share domains with TRT-AGT2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRT-AGT2-1 Gene

Function for TRT-AGT2-1 Gene

Phenotypes From GWAS Catalog for TRT-AGT2-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRT-AGT2-1 Gene

Localization for TRT-AGT2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRT-AGT2-1 Gene

Pathways & Interactions for TRT-AGT2-1 Gene

PathCards logo

SuperPathways for TRT-AGT2-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRT-AGT2-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRT-AGT2-1 Gene

Drugs & Compounds for TRT-AGT2-1 Gene

No Compound Related Data Available

Transcripts for TRT-AGT2-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRT-AGT2-1 Gene

TRT-AGT2-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRT-AGT2-1 Gene

No ASD Table

Relevant External Links for TRT-AGT2-1 Gene

GeneLoc Exon Structure for
TRT-AGT2-1

No data available for mRNA/cDNA for TRT-AGT2-1 Gene

Expression for TRT-AGT2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRT-AGT2-1 Gene

Orthologs for TRT-AGT2-1 Gene

No data available for Orthologs and Evolution for TRT-AGT2-1 Gene

Paralogs for TRT-AGT2-1 Gene

No data available for Paralogs for TRT-AGT2-1 Gene

Variants for TRT-AGT2-1 Gene

Additional Variant Information for TRT-AGT2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRT-AGT2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRT-AGT2-1 Gene

Disorders for TRT-AGT2-1 Gene

No disorders were found for TRT-AGT2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRT-AGT2-1 Gene

Publications for TRT-AGT2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRT-AGT2-1 Gene

Products for TRT-AGT2-1 Gene

Sources for TRT-AGT2-1 Gene