Aliases for TRSUP-TTA3-1 Gene

Aliases for TRSUP-TTA3-1 Gene

  • TRNA Suppressor (Anticodon TTA) 3-1 2 3
  • Transfer RNA Suppressor 5 (Anticodon UUA) Pseudogene 2 3
  • Transfer RNA Suppressor (TTA) 3-1 2 3
  • TRNA-Sup-TTA-3-1 3
  • TRNASUP5P 3

External Ids for TRSUP-TTA3-1 Gene

Previous HGNC Symbols for TRSUP-TTA3-1 Gene

  • TRNASUP5P

Summaries for TRSUP-TTA3-1 Gene

GeneCards Summary for TRSUP-TTA3-1 Gene

TRSUP-TTA3-1 (TRNA Suppressor (Anticodon TTA) 3-1) is a Pseudogene.

Additional gene information for TRSUP-TTA3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRSUP-TTA3-1 Gene

Genomics for TRSUP-TTA3-1 Gene

GeneHancer (GH) Regulatory Elements for TRSUP-TTA3-1 Gene

Promoters and enhancers for TRSUP-TTA3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J007322 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.6 610 3.1 CTCF ZIC2 ZBTB10 BCL11A SMC3 ZNF263 TBP NR3C1 ZFHX2 ZBTB48 HG984041 TRSUP-TTA3-1 MIR4798 SORCS2
GH04J007327 Enhancer 0.3 Ensembl dbSUPER 500.7 -1.2 -1219 0.4 HG984041 TRSUP-TTA3-1 piR-40497-038 SORCS2
GH04J007328 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 -4.9 -4919 1.4 JUND ZIC2 CTCF MAX POLR2A MAZ ESR1 ZFX HG984041 TRSUP-TTA3-1 piR-40497-038 SORCS2
GH04J007335 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -11.2 -11178 1.9 CTCF REST RAD21 SMC3 GABPB1 MYC NR2F1 ZNF654 TEAD3 RBM39 HG984041 TRSUP-TTA3-1 piR-40497-038 SORCS2
GH04J007326 Enhancer 0.6 Ensembl dbSUPER 0.7 -3.1 -3119 1 REST ESR1 NFIB HG984041 TRSUP-TTA3-1 piR-40497-038 SORCS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRSUP-TTA3-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRSUP-TTA3-1 Gene

Genomic Locations for TRSUP-TTA3-1 Gene
chr4:7,324,111-7,324,182
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr4:7,325,838-7,325,909
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRSUP-TTA3-1 Gene

Genes around TRSUP-TTA3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRSUP-TTA3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRSUP-TTA3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRSUP-TTA3-1 Gene

Proteins for TRSUP-TTA3-1 Gene

Post-translational modifications for TRSUP-TTA3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRSUP-TTA3-1 Gene

Domains & Families for TRSUP-TTA3-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRSUP-TTA3-1 Gene

Function for TRSUP-TTA3-1 Gene

Phenotypes From GWAS Catalog for TRSUP-TTA3-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRSUP-TTA3-1 Gene

Localization for TRSUP-TTA3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRSUP-TTA3-1 Gene

Pathways & Interactions for TRSUP-TTA3-1 Gene

PathCards logo

SuperPathways for TRSUP-TTA3-1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TRSUP-TTA3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRSUP-TTA3-1 Gene

Drugs & Compounds for TRSUP-TTA3-1 Gene

No Compound Related Data Available

Transcripts for TRSUP-TTA3-1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRSUP-TTA3-1 Gene

No ASD Table

Relevant External Links for TRSUP-TTA3-1 Gene

GeneLoc Exon Structure for
TRSUP-TTA3-1

No data available for mRNA/cDNA for TRSUP-TTA3-1 Gene

Expression for TRSUP-TTA3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRSUP-TTA3-1 Gene

Orthologs for TRSUP-TTA3-1 Gene

No data available for Orthologs and Evolution for TRSUP-TTA3-1 Gene

Paralogs for TRSUP-TTA3-1 Gene

No data available for Paralogs for TRSUP-TTA3-1 Gene

Variants for TRSUP-TTA3-1 Gene

Additional Variant Information for TRSUP-TTA3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRSUP-TTA3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRSUP-TTA3-1 Gene

Disorders for TRSUP-TTA3-1 Gene

No disorders were found for TRSUP-TTA3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRSUP-TTA3-1 Gene

Publications for TRSUP-TTA3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 54

No data available for Mastermind for TRSUP-TTA3-1 Gene

Products for TRSUP-TTA3-1 Gene

Sources for TRSUP-TTA3-1 Gene