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Aliases for TRSUP-CTA2-1 Gene

Subcategory (RNA class) for TRSUP-CTA2-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRSUP-CTA2-1 Gene

  • Transfer RNA Suppressor (CTA) 2-1 2 3
  • Transfer RNA Suppressor 4 (Anticodon CUA) Pseudogene 2 3
  • TRNA-Sup-CTA-2-1 3
  • TRNASUP4P 3

External Ids for TRSUP-CTA2-1 Gene

Previous HGNC Symbols for TRSUP-CTA2-1 Gene

  • TRNASUP4P

Previous GeneCards Identifiers for TRSUP-CTA2-1 Gene

  • GC03U902802

Summaries for TRSUP-CTA2-1 Gene

GeneCards Summary for TRSUP-CTA2-1 Gene

TRSUP-CTA2-1 (Transfer RNA Suppressor (CTA) 2-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRSUP-CTA2-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRSUP-CTA2-1 Gene

Genomics for TRSUP-CTA2-1 Gene

GeneHancer (GH) Regulatory Elements for TRSUP-CTA2-1 Gene

Promoters and enhancers for TRSUP-CTA2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I013770 Enhancer 0.3 ENCODE 0.3 -21.7 -21716 0.8 ZNF623 TRSUP-CTA2-1 LOC100293612
GH03I013653 Enhancer 0.9 Ensembl ENCODE 0.1 -137.5 -137465 2.5 CTCF LEF1 USF1 RB1 ARNT BMI1 ZIC2 ZNF335 ZFHX2 CTBP1 LOC100293612 LINC00620 TRSUP-CTA2-1
GH03I013718 Enhancer 0.4 ENCODE 0.2 -73.6 -73647 0.9 RFX1 HNF4A LINC00620 LOC100293612 TRSUP-CTA2-1
GH03I013728 Enhancer 0.3 ENCODE 0.2 -63.5 -63529 0.8 SP1 TRSUP-CTA2-1 LOC100293612 LINC00620
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRSUP-CTA2-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRSUP-CTA2-1 Gene

Genomic Locations for TRSUP-CTA2-1 Gene
chr3:13,792,389-13,792,456
(GRCh38/hg38)
Size:
68 bases
Orientation:
Plus strand

Genomic View for TRSUP-CTA2-1 Gene

Genes around TRSUP-CTA2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRSUP-CTA2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRSUP-CTA2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRSUP-CTA2-1 Gene

Proteins for TRSUP-CTA2-1 Gene

Post-translational modifications for TRSUP-CTA2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRSUP-CTA2-1 Gene

Domains & Families for TRSUP-CTA2-1 Gene

Gene Families for TRSUP-CTA2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRSUP-CTA2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRSUP-CTA2-1 Gene

Function for TRSUP-CTA2-1 Gene

Phenotypes From GWAS Catalog for TRSUP-CTA2-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRSUP-CTA2-1 Gene

Localization for TRSUP-CTA2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRSUP-CTA2-1 Gene

Pathways & Interactions for TRSUP-CTA2-1 Gene

SuperPathways for TRSUP-CTA2-1 Gene

No Data Available

Interacting Proteins for TRSUP-CTA2-1 Gene

Gene Ontology (GO) - Biological Process for TRSUP-CTA2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRSUP-CTA2-1 Gene

Drugs & Compounds for TRSUP-CTA2-1 Gene

No Compound Related Data Available

Transcripts for TRSUP-CTA2-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRSUP-CTA2-1 Gene

No ASD Table

Relevant External Links for TRSUP-CTA2-1 Gene

GeneLoc Exon Structure for
TRSUP-CTA2-1
ECgene alternative splicing isoforms for
TRSUP-CTA2-1

No data available for mRNA/cDNA for TRSUP-CTA2-1 Gene

Expression for TRSUP-CTA2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRSUP-CTA2-1 Gene

Orthologs for TRSUP-CTA2-1 Gene

No data available for Orthologs and Evolution for TRSUP-CTA2-1 Gene

Paralogs for TRSUP-CTA2-1 Gene

No data available for Paralogs for TRSUP-CTA2-1 Gene

Variants for TRSUP-CTA2-1 Gene

Additional Variant Information for TRSUP-CTA2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRSUP-CTA2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRSUP-CTA2-1 Gene

Disorders for TRSUP-CTA2-1 Gene

No disorders were found for TRSUP-CTA2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRSUP-CTA2-1 Gene

Publications for TRSUP-CTA2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRSUP-CTA2-1 Gene

Sources for TRSUP-CTA2-1 Gene

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