TRS-TGA4-1 Gene (RNA Gene)

TRNA-Ser (Anticodon TGA) 4-1

GC06M027505
GIFtS:
7
Hong et al. (1992) [PubMed 1549482] sequenced a human serine tRNA by the dideoxysequencing method. Sequence analysis revealed that the gene forms a typical cloverleaf structure with all appropriate conserved bases, and that the anticodon sequence is 5-prime-UGA-3-prime. The gene has no introns and its nucleotide sequence is highly homologous to those of previously characterized... See more...

Aliases for TRS-TGA4-1 Gene

Subcategory (RNA class) for TRS-TGA4-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRS-TGA4-1 Gene

  • TRNA-Ser (Anticodon TGA) 4-1 2 3
  • TRNA-Ser-TGA-4-1 2 3 162
  • Transfer RNA Serine 3 (Anticodon UGA) 2 3
  • TRNA Serine 3 (Anticodon UGA) 2 3
  • Transfer RNA-Ser (TGA) 4-1 2 3
  • TRNA Serine (UGA) 3 2 3
  • TRS-TGA4-1 2
  • RF00005 168
  • TRNAS3 3
  • TRS3 3

External Ids for TRS-TGA4-1 Gene

Previous HGNC Symbols for TRS-TGA4-1 Gene

  • TRS3
  • TRNAS3

Summaries for TRS-TGA4-1 Gene

Entrez Gene Summary for TRS-TGA4-1 Gene

  • Hong et al. (1992) [PubMed 1549482] sequenced a human serine tRNA by the dideoxysequencing method. Sequence analysis revealed that the gene forms a typical cloverleaf structure with all appropriate conserved bases, and that the anticodon sequence is 5-prime-UGA-3-prime. The gene has no introns and its nucleotide sequence is highly homologous to those of previously characterized serine tRNAs.[supplied by OMIM, Sep 2009]

GeneCards Summary for TRS-TGA4-1 Gene

TRS-TGA4-1 (TRNA-Ser (Anticodon TGA) 4-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRS-TGA4-1 Gene

Additional gene information for TRS-TGA4-1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRS-TGA4-1 Gene

Genomics for TRS-TGA4-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRS-TGA4-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027505 Enhancer 1 ENCODE 600.7 +0.1 62 0.3 CREB1 GATAD2A TEAD4 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 RCOR2 TARDBP LOC107986584 TRS-TGA4-1 piR-36441-006 ZSCAN23 ZSCAN12 ENSG00000261839 ZSCAN31 ZNF322 PGBD1 ZKSCAN8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRS-TGA4-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRS-TGA4-1 Gene

Genomic Locations for TRS-TGA4-1 Gene
chr6:27,505,828-27,505,909
(GRCh38/hg38)
Size:
82 bases
Orientation:
Minus strand
chr6:27,473,607-27,473,688
(GRCh37/hg19)
Size:
82 bases
Orientation:
Minus strand

Genomic View for TRS-TGA4-1 Gene

Genes around TRS-TGA4-1 on UCSC Golden Path with GeneCards custom track
TRS-TGA4-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRS-TGA4-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-TGA4-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRS-TGA4-1 Gene

Proteins for TRS-TGA4-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRS-TGA4-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-TGA4-1 Gene

Domains & Families for TRS-TGA4-1 Gene

Gene Families for TRS-TGA4-1 Gene

HGNC:
genes like me logo Genes that share domains with TRS-TGA4-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRS-TGA4-1 Gene

Function for TRS-TGA4-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRS-TGA4-1 Gene

Phenotypes for TRS-TGA4-1 Gene

GenomeRNAi human phenotypes for TRS-TGA4-1:
genes like me logo Genes that share phenotypes with TRS-TGA4-1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-TGA4-1 Gene

Localization for TRS-TGA4-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRS-TGA4-1 Gene

Pathways & Interactions for TRS-TGA4-1 Gene

PathCards logo

SuperPathways for TRS-TGA4-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRS-TGA4-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRS-TGA4-1 Gene

Drugs & Compounds for TRS-TGA4-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRS-TGA4-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRS-TGA4-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024B38F_9606 tRNA 82 4

HGNC: 16294,

GtRNAdb: tRNA-Ser-TGA-4-1:CM000668.1:27473607-27473688, tRNA-Ser-TGA-4-1:CM000668.2:27505828-27505909,

Rfam: RF00005,

ENA: HG984035.1:1..82:tRNA, X63138.1:197..278:tRNA,

TRS-TGA4-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-TGA4-1 Gene

No ASD Table

Relevant External Links for TRS-TGA4-1 Gene

GeneLoc Exon Structure for
TRS-TGA4-1

No data available for mRNA/cDNA for TRS-TGA4-1 Gene

Expression for TRS-TGA4-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRS-TGA4-1 Gene

Orthologs for TRS-TGA4-1 Gene

No data available for Orthologs and Evolution for TRS-TGA4-1 Gene

Paralogs for TRS-TGA4-1 Gene

No data available for Paralogs for TRS-TGA4-1 Gene

Variants for TRS-TGA4-1 Gene

Additional Variant Information for TRS-TGA4-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-TGA4-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-TGA4-1 Gene

Disorders for TRS-TGA4-1 Gene

No disorders were found for TRS-TGA4-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-TGA4-1 Gene

Publications for TRS-TGA4-1 Gene

  1. An additional human serine tRNA gene. (PMID: 1549482) Hong HJ … Yoo OJ (Nucleic acids research 1992) 2 3
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

ExternalLinks

View latest publications for TRS-TGA4-1 gene in Mastermind

Products for TRS-TGA4-1 Gene

Sources for TRS-TGA4-1 Gene