Aliases for TRS-GCT4-2 Gene

Data sources for TRS-GCT4-2 Gene:

RNA type for TRS-GCT4-2 Gene

tRNA

Aliases for TRS-GCT4-2 Gene

External Ids for TRS-GCT4-2 Gene

Previous HGNC Symbols for TRS-GCT4-2 Gene

  • TRNAS18
  • TRS-GCT4-1

Previous GeneCards Identifiers for TRS-GCT4-2 Gene

  • GC17P008189
  • GC17P008200

Summaries for TRS-GCT4-2 Gene

GeneCards Summary for TRS-GCT4-2 Gene

TRS-GCT4-2 (TRNA-Ser (Anticodon GCT) 4-2) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRS-GCT4-2 Gene

Additional gene information for TRS-GCT4-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRS-GCT4-2 Gene

Genomics for TRS-GCT4-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRS-GCT4-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J040592 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.7 -650 3.3 SP1 ZNF207 ZNF600 SIX5 JUND ZNF580 ZNF592 ATF2 CEBPA POLR3G KNL1 TRS-GCT4-2 piR-34439-002 CCDC32 INO80 DNAJC17 ENSG00000259211 RMDN3 BMF RAD51-AS1
GH15J040589 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.7 +3.2 3230 2.6 BCLAF1 ZNF654 IKZF1 ZNF580 ZMYM3 CEBPA YY1 CTCF DEK TRIM22 CCDC32 RAD51 INO80 ENSG00000259211 BAHD1 DNAJC17 RAD51-AS1 RMDN3 GCHFR OIP5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRS-GCT4-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRS-GCT4-2 Gene

Latest Assembly
chr15:40,593,825-40,593,906
(GRCh38/hg38)
Size:
82 bases
Orientation:
Minus strand

Previous Assembly
chr15:40,886,023-40,886,104
(GRCh37/hg19 by Entrez Gene)
Size:
82 bases
Orientation:
Minus strand

Genomic View for TRS-GCT4-2 Gene

Genes around TRS-GCT4-2 on UCSC Golden Path with GeneCards custom track
TRS-GCT4-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TRS-GCT4-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-GCT4-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-GCT4-2 Gene

Proteins for TRS-GCT4-2 Gene

Post-translational modifications for TRS-GCT4-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-GCT4-2 Gene

Domains & Families for TRS-GCT4-2 Gene

Gene Families for TRS-GCT4-2 Gene

genes like me logo Genes that share domains with TRS-GCT4-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRS-GCT4-2 Gene

Function for TRS-GCT4-2 Gene

Phenotypes From GWAS Catalog for TRS-GCT4-2 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-GCT4-2 Gene

Localization for TRS-GCT4-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRS-GCT4-2 Gene

Pathways & Interactions for TRS-GCT4-2 Gene

PathCards logo

SuperPathways for TRS-GCT4-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRS-GCT4-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRS-GCT4-2 Gene

Drugs & Compounds for TRS-GCT4-2 Gene

No Compound Related Data Available

Transcripts for TRS-GCT4-2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRS-GCT4-2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002034DC_9606 ncRNA 82 3

GtRNAdb: tRNA-Ser-GCT-4-2:CM000677.2:40593825-40593906,

Rfam: RF00005,

ENA: HG984027.1:1..82:tRNA, HG984028.1:1..82:tRNA, HG984029.1:1..82:tRNA,

TRS-GCT4-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-GCT4-2 Gene

No ASD Table

Relevant External Links for TRS-GCT4-2 Gene

GeneLoc Exon Structure for
TRS-GCT4-2

No data available for mRNA/cDNA for TRS-GCT4-2 Gene

Expression for TRS-GCT4-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRS-GCT4-2 Gene

Orthologs for TRS-GCT4-2 Gene

No data available for Orthologs and Evolution for TRS-GCT4-2 Gene

Paralogs for TRS-GCT4-2 Gene

No data available for Paralogs for TRS-GCT4-2 Gene

Variants for TRS-GCT4-2 Gene

Additional Variant Information for TRS-GCT4-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-GCT4-2
Leiden Open Variation Database (LOVD)
TRS-GCT4-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-GCT4-2 Gene

Disorders for TRS-GCT4-2 Gene

No disorders were found for TRS-GCT4-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-GCT4-2 Gene

Publications for TRS-GCT4-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

Products for TRS-GCT4-2 Gene

Sources for TRS-GCT4-2 Gene