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Aliases for TRS-CGA1-1 Gene

Subcategory (RNA class) for TRS-CGA1-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRS-CGA1-1 Gene

  • Transfer RNA-Ser (CGA) 1-1 2 3
  • Transfer RNA Serine 6 (Anticodon CGA) 2 3
  • TRNA-Ser-CGA-1-1 3
  • TRNAS6 3

External Ids for TRS-CGA1-1 Gene

ORGUL Members for TRS-CGA1-1 Gene

Previous HGNC Symbols for TRS-CGA1-1 Gene

  • TRNAS6

Previous GeneCards Identifiers for TRS-CGA1-1 Gene

  • GC17M008167
  • GC17M008220
  • GC17M008276
  • GC17M008336
  • GC17M008360
  • GC17M008409
  • GC17M008441
  • GC17M008478

Summaries for TRS-CGA1-1 Gene

GeneCards Summary for TRS-CGA1-1 Gene

TRS-CGA1-1 (Transfer RNA-Ser (CGA) 1-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRS-CGA1-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRS-CGA1-1 Gene

Genomics for TRS-CGA1-1 Gene

GeneHancer (GH) Regulatory Elements for TRS-CGA1-1 Gene

Promoters and enhancers for TRS-CGA1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J008137 Enhancer 1.5 Ensembl ENCODE dbSUPER 650.7 -0.5 -489 3.7 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 SP3 GC17M008541 GC17M008544 TRS-CGA1-1 TRT-AGT5-1 DVL2 PFAS ENSG00000265749 CNTROB SENP3 NEURL4
GH17J008134 Enhancer 0.5 ENCODE 0.7 +4.9 4890 0 JUND FOSL2 FOS PRDM4 SNORD118 TMEM107 AURKB CTC1 PFAS GC17M008544 TRS-CGA1-1 LOC105376799
GH17J008133 Enhancer 0.6 ENCODE 0.4 +5.3 5319 0.7 USF1 MAX SIN3A USF2 POLR2A ZNF341 FOS FOSL2 SNORD118 TMEM107 BORCS6 CHD3 AURKB PFAS CTC1 ALOX15B ENSG00000226871 GC17M008544
GH17J008128 Enhancer 0.5 FANTOM5 0.4 +10.4 10372 0.2 GATA3 RFX1 ZBTB2 ZNF366 MAFK LOC105376799 ODF4 SNORD118 TMEM107 BORCS6 CHD3 ALOX15B CNTROB GC17M008544 TRS-CGA1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRS-CGA1-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRS-CGA1-1 Gene

Genomic Locations for TRS-CGA1-1 Gene
chr17:8,138,881-8,138,962
(GRCh38/hg38)
Size:
82 bases
Orientation:
Minus strand
chr17:8,042,199-8,042,280
(GRCh37/hg19)
Size:
82 bases
Orientation:
Minus strand

Genomic View for TRS-CGA1-1 Gene

Genes around TRS-CGA1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-CGA1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-CGA1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-CGA1-1 Gene

Proteins for TRS-CGA1-1 Gene

Post-translational modifications for TRS-CGA1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-CGA1-1 Gene

Domains & Families for TRS-CGA1-1 Gene

Gene Families for TRS-CGA1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-CGA1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-CGA1-1 Gene

Function for TRS-CGA1-1 Gene

Phenotypes From GWAS Catalog for TRS-CGA1-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-CGA1-1 Gene

Localization for TRS-CGA1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRS-CGA1-1 Gene

Pathways & Interactions for TRS-CGA1-1 Gene

SuperPathways for TRS-CGA1-1 Gene

No Data Available

Interacting Proteins for TRS-CGA1-1 Gene

Gene Ontology (GO) - Biological Process for TRS-CGA1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRS-CGA1-1 Gene

Drugs & Compounds for TRS-CGA1-1 Gene

No Compound Related Data Available

Transcripts for TRS-CGA1-1 Gene

mRNA/cDNA for TRS-CGA1-1 Gene

(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-CGA1-1 Gene

No ASD Table

Relevant External Links for TRS-CGA1-1 Gene

GeneLoc Exon Structure for
TRS-CGA1-1
ECgene alternative splicing isoforms for
TRS-CGA1-1

Expression for TRS-CGA1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRS-CGA1-1 Gene

Orthologs for TRS-CGA1-1 Gene

No data available for Orthologs and Evolution for TRS-CGA1-1 Gene

Paralogs for TRS-CGA1-1 Gene

No data available for Paralogs for TRS-CGA1-1 Gene

Variants for TRS-CGA1-1 Gene

Additional Variant Information for TRS-CGA1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-CGA1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-CGA1-1 Gene

Disorders for TRS-CGA1-1 Gene

No disorders were found for TRS-CGA1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-CGA1-1 Gene

Publications for TRS-CGA1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRS-CGA1-1 Gene

Sources for TRS-CGA1-1 Gene

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