TRS-AGA3-1 Gene (RNA Gene)

TRNA-Ser (Anticodon AGA) 3-1

GC06P027532
GIFtS:
6
See more...

Aliases for TRS-AGA3-1 Gene

Subcategory (RNA class) for TRS-AGA3-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRS-AGA3-1 Gene

  • TRNA-Ser (Anticodon AGA) 3-1 2 3
  • TRNA-Ser-AGA-3-1 2 3 162
  • Transfer RNA Serine 4 (Anticodon AGA) 2 3
  • TRNA Serine 4 (Anticodon AGA) 2 3
  • Transfer RNA-Ser (AGA) 3-1 2 3
  • TRS-AGA3-1 2
  • RF00005 168
  • TRNAS4 3
  • TRS4 3

External Ids for TRS-AGA3-1 Gene

Previous HGNC Symbols for TRS-AGA3-1 Gene

  • TRS4
  • TRNAS4

Summaries for TRS-AGA3-1 Gene

GeneCards Summary for TRS-AGA3-1 Gene

TRS-AGA3-1 (TRNA-Ser (Anticodon AGA) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRS-AGA3-1 Gene

Additional gene information for TRS-AGA3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRS-AGA3-1 Gene

Genomics for TRS-AGA3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRS-AGA3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027534 Enhancer 0.8 ENCODE 600.7 +0.1 69 0.2 IKZF1 MTA2 PHF21A PKNOX1 ZNF24 NR2C1 BRD9 HDAC1 SOX6 EP300 TRS-AGA3-1 ZSCAN12 ZNF322 ZKSCAN8 ZSCAN23 RNU6-471P TRS-AGA1-1 ZNF184 H2BC13
GH06J027532 Enhancer 0.4 ENCODE 600.7 +0.8 809 0.2 IKZF1 ZBTB44 BCL11A SMARCA4 TRS-AGA3-1 RNU6-471P POM121L2 ZNF184 ABT1 TRS-AGA1-1 H2BC13
GH06J027535 Enhancer 0.3 ENCODE 600.7 +1.1 1149 0.2 IKZF1 TRS-AGA3-1 RNU6-471P POM121L2 ZNF184 TRS-AGA1-1 H2BC13
GH06J027533 Enhancer 0.2 ENCODE 600.7 +1.4 1389 0 TRS-AGA3-1 RNU6-471P POM121L2 ZNF184 TRS-AGA1-1 H2BC13
GH06J027541 Enhancer 0.9 ENCODE 0.4 +9.6 9609 0.2 ZNF221 TEAD4 ZNF629 LEF1 IKZF1 PHF21A ZNF24 NR2C1 BRD9 ZNF501 TRS-AGA1-1 piR-36441-007 ZSCAN12 ZSCAN23 ZKSCAN8 ZSCAN26 ZNF322 ZKSCAN3 ZSCAN9 PGBD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRS-AGA3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRS-AGA3-1 Gene

Genomic Locations for TRS-AGA3-1 Gene
chr6:27,532,208-27,532,289
(GRCh38/hg38)
Size:
82 bases
Orientation:
Plus strand
chr6:27,499,987-27,500,068
(GRCh37/hg19)
Size:
82 bases
Orientation:
Plus strand

Genomic View for TRS-AGA3-1 Gene

Genes around TRS-AGA3-1 on UCSC Golden Path with GeneCards custom track
TRS-AGA3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRS-AGA3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-AGA3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRS-AGA3-1 Gene

Proteins for TRS-AGA3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRS-AGA3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-AGA3-1 Gene

Domains & Families for TRS-AGA3-1 Gene

Gene Families for TRS-AGA3-1 Gene

HGNC:
genes like me logo Genes that share domains with TRS-AGA3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRS-AGA3-1 Gene

Function for TRS-AGA3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-AGA3-1 Gene

Localization for TRS-AGA3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRS-AGA3-1 Gene

Pathways & Interactions for TRS-AGA3-1 Gene

PathCards logo

SuperPathways for TRS-AGA3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRS-AGA3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRS-AGA3-1 Gene

Drugs & Compounds for TRS-AGA3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRS-AGA3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRS-AGA3-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000520742_9606 tRNA 82 4

HGNC: 33201,

GtRNAdb: tRNA-Ser-AGA-3-1:CM000668.1:27499987-27500068, tRNA-Ser-AGA-3-1:CM000668.2:27532208-27532289,

Rfam: RF00005,

ENA: HG984015.1:1..82:tRNA, X06760.1:178..259:tRNA,

TRS-AGA3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-AGA3-1 Gene

No ASD Table

Relevant External Links for TRS-AGA3-1 Gene

GeneLoc Exon Structure for
TRS-AGA3-1

No data available for mRNA/cDNA for TRS-AGA3-1 Gene

Expression for TRS-AGA3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRS-AGA3-1 Gene

Orthologs for TRS-AGA3-1 Gene

No data available for Orthologs and Evolution for TRS-AGA3-1 Gene

Paralogs for TRS-AGA3-1 Gene

No data available for Paralogs for TRS-AGA3-1 Gene

Variants for TRS-AGA3-1 Gene

Additional Variant Information for TRS-AGA3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-AGA3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-AGA3-1 Gene

Disorders for TRS-AGA3-1 Gene

No disorders were found for TRS-AGA3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-AGA3-1 Gene

Publications for TRS-AGA3-1 Gene

  1. Human tRNASer gene organization and a tRNASer gene sequence. (PMID: 3340558) Krupp JL … Martin NC (Nucleic acids research 1988) 2 3
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

ExternalLinks

View latest publications for TRS-AGA3-1 gene in Mastermind

Products for TRS-AGA3-1 Gene

Sources for TRS-AGA3-1 Gene