TRR-TCT5-1 Gene (RNA Gene)

TRNA-Arg (Anticodon TCT) 5-1

GC06P027562
GIFtS:
6
See more...

Aliases for TRR-TCT5-1 Gene

Subcategory (RNA class) for TRR-TCT5-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRR-TCT5-1 Gene

  • TRNA-Arg (Anticodon TCT) 5-1 2 3
  • TRNA-Arg-TCT-5-1 2 3 162
  • Transfer RNA Arginine 5 (Anticodon UCU) 2 3
  • Transfer RNA-Arg (TCT) 5-1 2 3
  • TRR-TCT5-1 2
  • RF00005 168
  • TRNAR5 3

External Ids for TRR-TCT5-1 Gene

Previous HGNC Symbols for TRR-TCT5-1 Gene

  • TRNAR5

Summaries for TRR-TCT5-1 Gene

GeneCards Summary for TRR-TCT5-1 Gene

TRR-TCT5-1 (TRNA-Arg (Anticodon TCT) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRR-TCT5-1 Gene

Additional gene information for TRR-TCT5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRR-TCT5-1 Gene

Genomics for TRR-TCT5-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRR-TCT5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027562 Promoter/Enhancer 0.9 Ensembl ENCODE 600.7 -0.4 -383 1.2 ZNF24 CEBPB EGR1 ATF3 ZNF316 USF1 TBP ZNF143 ETS1 ZBTB33 CD83P1 TRR-TCT5-1 lnc-ZNF184-4 ZNF603P ZNF184 H2BC13
GH06J027568 Enhancer 0.9 Ensembl ENCODE 0.4 +6.3 6327 1 CEBPG RFX1 LEF1 PHF21A PKNOX1 DPF2 HDAC1 SOX6 CEBPA SOX13 ZNF391 TRK-TTT9-1 TRR-TCT5-1 ZNF184 H2BC13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRR-TCT5-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRR-TCT5-1 Gene

Genomic Locations for TRR-TCT5-1 Gene
chr6:27,562,184-27,562,270
(GRCh38/hg38)
Size:
87 bases
Orientation:
Plus strand
chr6:27,529,963-27,530,049
(GRCh37/hg19)
Size:
87 bases
Orientation:
Plus strand

Genomic View for TRR-TCT5-1 Gene

Genes around TRR-TCT5-1 on UCSC Golden Path with GeneCards custom track
TRR-TCT5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRR-TCT5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRR-TCT5-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRR-TCT5-1 Gene

Proteins for TRR-TCT5-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRR-TCT5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRR-TCT5-1 Gene

Domains & Families for TRR-TCT5-1 Gene

Gene Families for TRR-TCT5-1 Gene

HGNC:
genes like me logo Genes that share domains with TRR-TCT5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRR-TCT5-1 Gene

Function for TRR-TCT5-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRR-TCT5-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRR-TCT5-1 Gene

Localization for TRR-TCT5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRR-TCT5-1 Gene

Pathways & Interactions for TRR-TCT5-1 Gene

PathCards logo

SuperPathways for TRR-TCT5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRR-TCT5-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRR-TCT5-1 Gene

Drugs & Compounds for TRR-TCT5-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRR-TCT5-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRR-TCT5-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000755838_9606 tRNA 73 3

HGNC: 34571,

GtRNAdb: tRNA-Arg-TCT-5-1:CM000668.1:27529963-27530049, tRNA-Arg-TCT-5-1:CM000668.2:27562184-27562270,

ENA: HG983626.1:1..87:tRNA,

URS000062C73B_9606 tRNA 87 1

Rfam: RF00005,

TRR-TCT5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRR-TCT5-1 Gene

No ASD Table

Relevant External Links for TRR-TCT5-1 Gene

GeneLoc Exon Structure for
TRR-TCT5-1

No data available for mRNA/cDNA for TRR-TCT5-1 Gene

Expression for TRR-TCT5-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRR-TCT5-1 Gene

Orthologs for TRR-TCT5-1 Gene

No data available for Orthologs and Evolution for TRR-TCT5-1 Gene

Paralogs for TRR-TCT5-1 Gene

No data available for Paralogs for TRR-TCT5-1 Gene

Variants for TRR-TCT5-1 Gene

Additional Variant Information for TRR-TCT5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRR-TCT5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRR-TCT5-1 Gene

Disorders for TRR-TCT5-1 Gene

No disorders were found for TRR-TCT5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRR-TCT5-1 Gene

Publications for TRR-TCT5-1 Gene

No publications were found for TRR-TCT5-1 Gene.

No data available for Mastermind for TRR-TCT5-1 Gene

Products for TRR-TCT5-1 Gene

Sources for TRR-TCT5-1 Gene