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Aliases for TRR-TCT4-1 Gene

Subcategory (RNA class) for TRR-TCT4-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRR-TCT4-1 Gene

  • Transfer RNA-Arg (TCT) 4-1 2 3
  • Transfer RNA Arginine 16 (Anticodon UCU) 2 3
  • TRNA-Arg-TCT-4-1 3
  • TRNAR16 3

External Ids for TRR-TCT4-1 Gene

ORGUL Members for TRR-TCT4-1 Gene

Previous HGNC Symbols for TRR-TCT4-1 Gene

  • TRNAR16

Summaries for TRR-TCT4-1 Gene

GeneCards Summary for TRR-TCT4-1 Gene

TRR-TCT4-1 (Transfer RNA-Arg (TCT) 4-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRR-TCT4-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRR-TCT4-1 Gene

Genomics for TRR-TCT4-1 Gene

GeneHancer (GH) Regulatory Elements for TRR-TCT4-1 Gene

Promoters and enhancers for TRR-TCT4-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I159141 Enhancer 0.8 FANTOM5 Ensembl 550.8 -0.3 -305 0.8 MXI1 SP1 JUND ATF3 POLR3A ZBTB48 POLR2A FOS PRDM10 ZBTB17 TRR-TCT4-1 GC01M159143 OR6K3 OR6N1 FCER1A CADM3 ACKR1 CADM3-AS1 OR6N2 OR10J5
GH01I159090 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +50.2 50211 3.1 CTCF JUN ZFP64 CEBPG FOSL1 POLR2A NFE2 FOSL2 FOS SMARCC1 RAD1P2 SLAMF8 SNHG28 AIM2 GC01M159143 TRR-TCT4-1
GH01I159087 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +53.1 53133 1.3 SMARCE1 CTCF TRIM22 REST RAD21 FOSL1 CTBP1 JUND POLR2A IKZF1 RAD1P2 GC01M159143 TRR-TCT4-1 AIM2
GH01I159084 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 0.2 +56.8 56838 0.9 POLR2A GABPA MNDA AIM2 IFI16 RAD1P2 TRR-TCT4-1 GC01M159143
GH01I159089 Enhancer 0.7 ENCODE dbSUPER 0.2 +52.3 52278 0.2 CTCF KLF16 TRIM22 ZNF143 REST RAD21 RAD1P2 GC01M159143 TRR-TCT4-1 AIM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRR-TCT4-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRR-TCT4-1 Gene

Genomic Locations for TRR-TCT4-1 Gene
chr1:159,141,611-159,141,684
(GRCh38/hg38)
Size:
74 bases
Orientation:
Minus strand
chr1:159,111,401-159,111,474
(GRCh37/hg19)

Genomic View for TRR-TCT4-1 Gene

Genes around TRR-TCT4-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRR-TCT4-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRR-TCT4-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRR-TCT4-1 Gene

Proteins for TRR-TCT4-1 Gene

Post-translational modifications for TRR-TCT4-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRR-TCT4-1 Gene

Domains & Families for TRR-TCT4-1 Gene

Gene Families for TRR-TCT4-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRR-TCT4-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRR-TCT4-1 Gene

Function for TRR-TCT4-1 Gene

Phenotypes From GWAS Catalog for TRR-TCT4-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRR-TCT4-1 Gene

Localization for TRR-TCT4-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRR-TCT4-1 Gene

Pathways & Interactions for TRR-TCT4-1 Gene

SuperPathways for TRR-TCT4-1 Gene

No Data Available

Interacting Proteins for TRR-TCT4-1 Gene

Gene Ontology (GO) - Biological Process for TRR-TCT4-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRR-TCT4-1 Gene

Drugs & Compounds for TRR-TCT4-1 Gene

No Compound Related Data Available

Transcripts for TRR-TCT4-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRR-TCT4-1 Gene

No ASD Table

Relevant External Links for TRR-TCT4-1 Gene

GeneLoc Exon Structure for
TRR-TCT4-1
ECgene alternative splicing isoforms for
TRR-TCT4-1

No data available for mRNA/cDNA for TRR-TCT4-1 Gene

Expression for TRR-TCT4-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRR-TCT4-1 Gene

Orthologs for TRR-TCT4-1 Gene

No data available for Orthologs and Evolution for TRR-TCT4-1 Gene

Paralogs for TRR-TCT4-1 Gene

No data available for Paralogs for TRR-TCT4-1 Gene

Variants for TRR-TCT4-1 Gene

Additional Variant Information for TRR-TCT4-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRR-TCT4-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRR-TCT4-1 Gene

Disorders for TRR-TCT4-1 Gene

No disorders were found for TRR-TCT4-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRR-TCT4-1 Gene

Publications for TRR-TCT4-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRR-TCT4-1 Gene

Sources for TRR-TCT4-1 Gene

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