Aliases for TRR-TCT3-1 Gene

Data sources for TRR-TCT3-1 Gene:

RNA type for TRR-TCT3-1 Gene

tRNA

Aliases for TRR-TCT3-1 Gene

External Ids for TRR-TCT3-1 Gene

Previous HGNC Symbols for TRR-TCT3-1 Gene

  • TRNAR12
  • TRR-TCT3-2

Previous GeneCards Identifiers for TRR-TCT3-1 Gene

  • GC11P059552

Summaries for TRR-TCT3-1 Gene

GeneCards Summary for TRR-TCT3-1 Gene

TRR-TCT3-1 (TRNA-Arg (Anticodon TCT) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRR-TCT3-1 Gene

Additional gene information for TRR-TCT3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRR-TCT3-1 Gene

Genomics for TRR-TCT3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRR-TCT3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J128339 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.5 -520 2.2 BCLAF1 SP1 ZNF207 ZNF600 MYC IKZF1 SIX5 SSRP1 ZNF580 CEBPA SLC27A4 TMSB4XP4 TRR-TCT3-1 lnc-COQ4-1 ZNF79 NUP188 NAIF1 SNORA65 GLE1 CIZ1
GH09J128342 Promoter 0.6 EPDnew 250.7 -2.0 -1958 0.1 CREB1 ZNF311 SCRT2 TMSB4XP4 SLC27A4 TRR-TCT3-1 lnc-COQ4-1 DOLK RF00017-7359 URM1 RF00017-7353 RF00017-7358 MK280607-157
GH09J128340 Enhancer 0.3 ENCODE 250.7 +0.8 784 0.1 ZNF362 ZNF121 HSALNG0074610 SLC27A4 TRR-TCT3-1 lnc-TRUB2-1 COQ4 RF00017-7359 RF00017-7353 RF00017-7358 MK280607-157
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRR-TCT3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRR-TCT3-1 Gene

Latest Assembly
chr9:128,339,779-128,340,181
(GRCh38/hg38)
Size:
403 bases
Orientation:
Minus strand

Previous Assembly
chr9:131,102,355-131,102,445
(GRCh37/hg19 by Entrez Gene)
Size:
91 bases
Orientation:
Minus strand

Genomic View for TRR-TCT3-1 Gene

Genes around TRR-TCT3-1 on UCSC Golden Path with GeneCards custom track
TRR-TCT3-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TRR-TCT3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRR-TCT3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRR-TCT3-1 Gene

Proteins for TRR-TCT3-1 Gene

Post-translational modifications for TRR-TCT3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRR-TCT3-1 Gene

Domains & Families for TRR-TCT3-1 Gene

Gene Families for TRR-TCT3-1 Gene

genes like me logo Genes that share domains with TRR-TCT3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRR-TCT3-1 Gene

Function for TRR-TCT3-1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRR-TCT3-1 Gene

Localization for TRR-TCT3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRR-TCT3-1 Gene

Pathways & Interactions for TRR-TCT3-1 Gene

PathCards logo

SuperPathways for TRR-TCT3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRR-TCT3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRR-TCT3-1 Gene

Drugs & Compounds for TRR-TCT3-1 Gene

No Compound Related Data Available

Transcripts for TRR-TCT3-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRR-TCT3-1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000225EE1_9606 ncRNA 73 2

GtRNAdb: tRNA-Arg-TCT-3-1:CM000671.2:128340076-128340166,

ENA: HG983623.1:1..86:tRNA, HG983624.1:1..91:tRNA,

URS0001BFA572_9606 ncRNA 403 1

LncBook: HSALNT0155707,

URS00006BFB96_9606 ncRNA 91 1

Rfam: RF00005,

TRR-TCT3-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for TRR-TCT3-1 Gene

No ASD Table

Relevant External Links for TRR-TCT3-1 Gene

GeneLoc Exon Structure for
TRR-TCT3-1

No data available for mRNA/cDNA for TRR-TCT3-1 Gene

Expression for TRR-TCT3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRR-TCT3-1 Gene

Orthologs for TRR-TCT3-1 Gene

No data available for Orthologs and Evolution for TRR-TCT3-1 Gene

Paralogs for TRR-TCT3-1 Gene

No data available for Paralogs for TRR-TCT3-1 Gene

Variants for TRR-TCT3-1 Gene

Additional Variant Information for TRR-TCT3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRR-TCT3-1
Leiden Open Variation Database (LOVD)
TRR-TCT3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRR-TCT3-1 Gene

Disorders for TRR-TCT3-1 Gene

No disorders were found for TRR-TCT3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRR-TCT3-1 Gene

Publications for TRR-TCT3-1 Gene

No publications were found for TRR-TCT3-1 Gene.

No data available for Mastermind for TRR-TCT3-1 Gene

Products for TRR-TCT3-1 Gene

Sources for TRR-TCT3-1 Gene