TRR-TCG4-1 Gene (RNA Gene)

TRNA-Arg (Anticodon TCG) 4-1

GC06P028685
GIFtS:
7
See more...

Aliases for TRR-TCG4-1 Gene

Subcategory (RNA class) for TRR-TCG4-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRR-TCG4-1 Gene

  • TRNA-Arg (Anticodon TCG) 4-1 2 3
  • TRNA-Arg-TCG-4-1 2 3 162
  • Transfer RNA Arginine 3 (Anticodon UCG) 2 3
  • TRNA Arginine 3 (Anticodon UCG) 2 3
  • Transfer RNA-Arg (TCG) 4-1 2 3
  • TRNA Arginine (UCG) 3 2 3
  • TRNA Arginine-3 3
  • TRR-TCG4-1 2
  • RF00005 168
  • TRNAR3 3
  • TRR3 3

External Ids for TRR-TCG4-1 Gene

Previous HGNC Symbols for TRR-TCG4-1 Gene

  • TRR3
  • TRNAR3

Previous GeneCards Identifiers for TRR-TCG4-1 Gene

  • GC06P026300
  • GC06P026369
  • GC06P027328
  • GC06P027441
  • GC06P027569
  • GC06P028009
  • GC06P026401
  • GC06P026452
  • GC06P026502
  • GC06P026799
  • GC06P026891
  • GC06P027002
  • GC06P027072
  • GC06P027223

Summaries for TRR-TCG4-1 Gene

GeneCards Summary for TRR-TCG4-1 Gene

TRR-TCG4-1 (TRNA-Arg (Anticodon TCG) 4-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRR-TCG4-1 Gene

Additional gene information for TRR-TCG4-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRR-TCG4-1 Gene

Genomics for TRR-TCG4-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRR-TCG4-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J026300 Enhancer 0.9 ENCODE dbSUPER 600.7 +0.1 52 0.2 PATZ1 ZNF740 ZNF24 ZNF561 EP300 CBX3 ATF3 E2F5 USF1 MNT TRR-TCG4-1 ZNF322 H2AC10P H2AC9P HMGN4 BTN3A2 TRS-GCT6-1 H4C8 lnc-HIST1H2BI-2
GH06J026299 Enhancer 0.4 ENCODE dbSUPER 600.7 -0.4 -448 0.2 ZNF395 TRR-TCG4-1 H2AC10P H1-4 H2BC5 HMGN4 LARP1P1 BTN1A1 piR-38845-002 H4C8 lnc-HIST1H2BI-2
GH06J026294 Enhancer 1.2 ENCODE dbSUPER 0.7 -3.3 -3251 3.2 CREB1 GATAD2A ZNF629 PRDM10 TFE3 RFX1 LEF1 IKZF1 RCOR2 TARDBP HMGN4 ABT1 BTN2A1 ZNF322 BTN2A3P GUSBP2 H2AC10P HCG11 BTN2A2 H2BC5
GH06J026303 Promoter/Enhancer 1.5 ENCODE CraniofacialAtlas dbSUPER 0.4 +5.1 5070 2.8 GATAD2A ATF7 TEAD4 TFE3 ZNF512 LEF1 IKZF1 KDM1A ZNF692 RCOR2 TRS-GCT6-1 ZNF322 ABT1 GUSBP2 H2AC10P BTN2A2 TRIM38 H2AC9P BTN2A1 HMGN4
GH06J026292 Enhancer 0.4 Ensembl 0.4 -6.9 -6875 0.4 EGR1 ZFHX2 ATF4 EGR2 piR-38845-002 H2AC9P ENSG00000261584 BTN3A2 H4C8 TRR-TCG4-1 lnc-HIST1H2BI-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRR-TCG4-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRR-TCG4-1 Gene

Genomic Locations for TRR-TCG4-1 Gene
chr6:26,299,676-26,299,749
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand
chr6:26,299,905-26,299,977
(GRCh37/hg19)
Size:
73 bases
Orientation:
Plus strand

Genomic View for TRR-TCG4-1 Gene

Genes around TRR-TCG4-1 on UCSC Golden Path with GeneCards custom track
TRR-TCG4-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRR-TCG4-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRR-TCG4-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRR-TCG4-1 Gene

Proteins for TRR-TCG4-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRR-TCG4-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRR-TCG4-1 Gene

Domains & Families for TRR-TCG4-1 Gene

Gene Families for TRR-TCG4-1 Gene

HGNC:
genes like me logo Genes that share domains with TRR-TCG4-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRR-TCG4-1 Gene

Function for TRR-TCG4-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRR-TCG4-1 Gene

Localization for TRR-TCG4-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRR-TCG4-1 Gene

Pathways & Interactions for TRR-TCG4-1 Gene

PathCards logo

SuperPathways for TRR-TCG4-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRR-TCG4-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRR-TCG4-1 Gene

Drugs & Compounds for TRR-TCG4-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRR-TCG4-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRR-TCG4-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000677EA0_9606 tRNA 73 4

HGNC: 12345,

GtRNAdb: tRNA-Arg-TCG-4-1:CM000668.1:26299905-26299977, tRNA-Arg-TCG-4-1:CM000668.2:26299677-26299749,

Rfam: RF00005,

ENA: HG983618.1:1..73:tRNA,

URS000003B38D_9606 tRNA 73 1

ENA: Z69590.1:47..119:tRNA,

TRR-TCG4-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRR-TCG4-1 Gene

No ASD Table

Relevant External Links for TRR-TCG4-1 Gene

GeneLoc Exon Structure for
TRR-TCG4-1

No data available for mRNA/cDNA for TRR-TCG4-1 Gene

Expression for TRR-TCG4-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRR-TCG4-1 Gene

Orthologs for TRR-TCG4-1 Gene

No data available for Orthologs and Evolution for TRR-TCG4-1 Gene

Paralogs for TRR-TCG4-1 Gene

No data available for Paralogs for TRR-TCG4-1 Gene

Variants for TRR-TCG4-1 Gene

Additional Variant Information for TRR-TCG4-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRR-TCG4-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRR-TCG4-1 Gene

Disorders for TRR-TCG4-1 Gene

No disorders were found for TRR-TCG4-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRR-TCG4-1 Gene

Publications for TRR-TCG4-1 Gene

  1. A cluster of transfer RNA genes (TRM1, TRR3, and TRAN) on the short arm of human chromosome 6. (PMID: 8661117) Buckland RA … Sealey PG (Genomics 1996) 2 3
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

ExternalLinks

View latest publications for TRR-TCG4-1 gene in Mastermind

Products for TRR-TCG4-1 Gene

Sources for TRR-TCG4-1 Gene