Aliases for TRR-CCT9-1 Gene

Aliases for TRR-CCT9-1 Gene

  • TRNA-Arg (Anticodon CCT) 9-1 2 3
  • Transfer RNA Arginine 34 (Anticodon CCU) Pseudogene 2 3
  • Transfer RNA-Arg (CCT) 9-1 2 3
  • TRNA-Arg-CCT-9-1 2 3
  • TRNAR34P 3

External Ids for TRR-CCT9-1 Gene

Previous HGNC Symbols for TRR-CCT9-1 Gene

  • TRNAR34P

Summaries for TRR-CCT9-1 Gene

GeneCards Summary for TRR-CCT9-1 Gene

TRR-CCT9-1 (TRNA-Arg (Anticodon CCT) 9-1) is a Pseudogene.

Additional gene information for TRR-CCT9-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRR-CCT9-1 Gene

Genomics for TRR-CCT9-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRR-CCT9-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J063892 Promoter/Enhancer 0.8 Ensembl dbSUPER 250.7 -1.8 -1794 0.6 REST EHMT2 RUNX3 MIER1 HG983614 TRR-CCT9-1 MARK2 NAA40 HSALNG0084723 RCOR2 RF00017-938
GH11J063886 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -5.5 -5512 4 MXD4 CEBPA MNT IKZF1 SMAD5 ZNF217 POLR2A ELF1 THAP11 CEBPB HSALNG0084723 MARK2 SPINDOC HG983614 TRR-CCT9-1 RCOR2 RF00017-938
GH11J063895 Enhancer 0.5 dbSUPER 0.7 +3.2 3230 3.5 MNT BHLHE40 REST ZNF680 NFIC MARK2 NAA40 ZFTA PLAAT3 HG983614 TRR-CCT9-1 HSALNG0084724 RCOR2 RF00017-938
GH11J063901 Enhancer 0.5 dbSUPER 0.4 +7.7 7743 1.4 CTCF SMC3 RAD21 THRB ZSCAN4 HSALNG0084724 NAA40 SPINDOC ENSG00000256481 HG983614 TRR-CCT9-1 RCOR2 RF00017-938 MARK2
GH11J063891 Enhancer 0.3 dbSUPER 0.7 -2.6 -2595 0.8 RBM22 MARK2 NAA40 PLAAT3 HG983614 HSALNG0084723 TRR-CCT9-1 RCOR2 RF00017-938
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRR-CCT9-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRR-CCT9-1 Gene

Latest Assembly
chr11:63,894,295-63,894,363
(GRCh38/hg38)
Size:
69 bases
Orientation:
Plus strand

Previous Assembly
chr11:63,661,767-63,661,835
(GRCh37/hg19 by Entrez Gene)
Size:
69 bases
Orientation:
Plus strand

Genomic View for TRR-CCT9-1 Gene

Genes around TRR-CCT9-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRR-CCT9-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRR-CCT9-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRR-CCT9-1 Gene

Proteins for TRR-CCT9-1 Gene

Post-translational modifications for TRR-CCT9-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRR-CCT9-1 Gene

Domains & Families for TRR-CCT9-1 Gene

Gene Families for TRR-CCT9-1 Gene

genes like me logo Genes that share domains with TRR-CCT9-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRR-CCT9-1 Gene

Function for TRR-CCT9-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRR-CCT9-1 Gene

Localization for TRR-CCT9-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRR-CCT9-1 Gene

Pathways & Interactions for TRR-CCT9-1 Gene

PathCards logo

SuperPathways for TRR-CCT9-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRR-CCT9-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRR-CCT9-1 Gene

Drugs & Compounds for TRR-CCT9-1 Gene

No Compound Related Data Available

Transcripts for TRR-CCT9-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRR-CCT9-1 Gene

No ASD Table

Relevant External Links for TRR-CCT9-1 Gene

GeneLoc Exon Structure for
TRR-CCT9-1

No data available for mRNA/cDNA for TRR-CCT9-1 Gene

Expression for TRR-CCT9-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRR-CCT9-1 Gene

Orthologs for TRR-CCT9-1 Gene

No data available for Orthologs and Evolution for TRR-CCT9-1 Gene

Paralogs for TRR-CCT9-1 Gene

No data available for Paralogs for TRR-CCT9-1 Gene

Variants for TRR-CCT9-1 Gene

Additional Variant Information for TRR-CCT9-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRR-CCT9-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRR-CCT9-1 Gene

Disorders for TRR-CCT9-1 Gene

No disorders were found for TRR-CCT9-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRR-CCT9-1 Gene

Publications for TRR-CCT9-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRR-CCT9-1 Gene

Products for TRR-CCT9-1 Gene

Sources for TRR-CCT9-1 Gene