Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRQ-TTG5-1 Gene

Subcategory (RNA class) for TRQ-TTG5-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRQ-TTG5-1 Gene

  • Transfer RNA-Gln (TTG) 5-1 2 3
  • Transfer RNA Glutamine 39 (Anticodon UUG) Pseudogene 2 3
  • TRNA-Gln-TTG-5-1 3
  • TRNAQ39P 3

External Ids for TRQ-TTG5-1 Gene

Previous HGNC Symbols for TRQ-TTG5-1 Gene

  • TRNAQ39P

Summaries for TRQ-TTG5-1 Gene

GeneCards Summary for TRQ-TTG5-1 Gene

TRQ-TTG5-1 (Transfer RNA-Gln (TTG) 5-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRQ-TTG5-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRQ-TTG5-1 Gene

Genomics for TRQ-TTG5-1 Gene

GeneHancer (GH) Regulatory Elements for TRQ-TTG5-1 Gene

Promoters and enhancers for TRQ-TTG5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I045727 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -19.3 -19305 3.5 PKNOX1 SMAD1 BMI1 BATF KLF5 IRF4 RAD21 ZNF207 ZNF143 ATF7 GC02P045738 TRQ-TTG5-1 PRKCE
GH02I045698 Enhancer 0.8 Ensembl ENCODE 0.4 +11.1 11095 1.3 JUNB EBF1 BATF ATF2 JUND NFATC1 RCOR1 RUNX3 CHD2 LOC105374580 PRKCE TRQ-TTG5-1
GH02I045722 Enhancer 0.7 Ensembl ENCODE 0.4 -12.9 -12851 1.2 ZNF687 MAX EBF1 MNT MLLT1 SP7 PRKCE LOC105374580 TRQ-TTG5-1 GC02P045738
GH02I045690 Enhancer 0.7 ENCODE 0.4 +19.3 19287 1.6 PKNOX1 EBF1 BATF IRF4 POLR2A NFATC1 SCRT2 ETV6 BCLAF1 IKZF2 PRKCE LOC105374580 TRQ-TTG5-1
GH02I045681 Enhancer 0.9 Ensembl ENCODE 0.3 +28.0 28030 1.9 JUN BACH1 CEBPB EP300 FOSL1 MAFF JUND ZNF316 POLR2A ZKSCAN8 PRKCE LOC105374580 TRQ-TTG5-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRQ-TTG5-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRQ-TTG5-1 Gene

Genomic Locations for TRQ-TTG5-1 Gene
chr2:45,710,302-45,710,374
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr2:45,937,441-45,937,513
(GRCh37/hg19)

Genomic View for TRQ-TTG5-1 Gene

Genes around TRQ-TTG5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRQ-TTG5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRQ-TTG5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRQ-TTG5-1 Gene

Proteins for TRQ-TTG5-1 Gene

Post-translational modifications for TRQ-TTG5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRQ-TTG5-1 Gene

Domains & Families for TRQ-TTG5-1 Gene

Gene Families for TRQ-TTG5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRQ-TTG5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRQ-TTG5-1 Gene

Function for TRQ-TTG5-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRQ-TTG5-1 Gene

Localization for TRQ-TTG5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRQ-TTG5-1 Gene

Pathways & Interactions for TRQ-TTG5-1 Gene

SuperPathways for TRQ-TTG5-1 Gene

No Data Available

Interacting Proteins for TRQ-TTG5-1 Gene

Gene Ontology (GO) - Biological Process for TRQ-TTG5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRQ-TTG5-1 Gene

Drugs & Compounds for TRQ-TTG5-1 Gene

No Compound Related Data Available

Transcripts for TRQ-TTG5-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRQ-TTG5-1 Gene

No ASD Table

Relevant External Links for TRQ-TTG5-1 Gene

GeneLoc Exon Structure for
TRQ-TTG5-1
ECgene alternative splicing isoforms for
TRQ-TTG5-1

No data available for mRNA/cDNA for TRQ-TTG5-1 Gene

Expression for TRQ-TTG5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRQ-TTG5-1 Gene

Orthologs for TRQ-TTG5-1 Gene

No data available for Orthologs and Evolution for TRQ-TTG5-1 Gene

Paralogs for TRQ-TTG5-1 Gene

No data available for Paralogs for TRQ-TTG5-1 Gene

Variants for TRQ-TTG5-1 Gene

Additional Variant Information for TRQ-TTG5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRQ-TTG5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRQ-TTG5-1 Gene

Disorders for TRQ-TTG5-1 Gene

No disorders were found for TRQ-TTG5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRQ-TTG5-1 Gene

Publications for TRQ-TTG5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRQ-TTG5-1 Gene

Sources for TRQ-TTG5-1 Gene

Content
Loading form....