Aliases for TRQ-CTG5-1 Gene

Subcategory (RNA class) for TRQ-CTG5-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRQ-CTG5-1 Gene

  • TRNA-Gln (Anticodon CTG) 5-1 2 3
  • TRNA-Gln-CTG-5-1 2 3 162
  • Transfer RNA Glutamine 27 (Anticodon CUG) 2 3
  • Transfer RNA-Gln (CTG) 5-1 2 3
  • TRQ-CTG5-1 2
  • TRNAQ27 3
  • RF00005 168

External Ids for TRQ-CTG5-1 Gene

Previous HGNC Symbols for TRQ-CTG5-1 Gene

  • TRNAQ27

Previous GeneCards Identifiers for TRQ-CTG5-1 Gene

  • GC06P027296
  • GC06P027300
  • GC06P027419
  • GC06P027556
  • GC06P027615
  • GC06P028070
  • GC06P027307

Summaries for TRQ-CTG5-1 Gene

GeneCards Summary for TRQ-CTG5-1 Gene

TRQ-CTG5-1 (TRNA-Gln (Anticodon CTG) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRQ-CTG5-1 Gene

Additional gene information for TRQ-CTG5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRQ-CTG5-1 Gene

Genomics for TRQ-CTG5-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRQ-CTG5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027293 Enhancer 1.1 FANTOM5 ENCODE 600.7 -1.7 -1661 0.4 TEAD4 PRDM10 ZNF629 JUND DDX20 PHF21A POLR2A ZNF24 MTA1 IRF2 RF00005-144 TRQ-CTG5-1 TRS-ACT1-1 piR-36037-010 piR-36378-005 ENSG00000261584 ZSCAN26 ZNF391 ZNF322 ZKSCAN8
GH06J027295 Enhancer 1 ENCODE 600.7 +0.0 24 0.2 RNF2 CREB1 GATAD2A TEAD4 ZNF629 TFE3 ZNF512 ZNF692 RCOR2 JUND RF00005-144 TRQ-CTG5-1 TRS-ACT1-1 piR-36037-010 piR-36378-005 ZKSCAN8 ENSG00000261584 ABT1 BTN2A3P BTN2A2
GH06J027296 Enhancer 0.9 ENCODE 600.7 +0.8 829 0.8 RNF2 ARHGAP35 TEAD4 PRDM10 ZNF629 ZNF512 IKZF1 FOXA1 PRDM1 RFX1 TRQ-CTG5-1 TRS-GCT2-1 U92097 piR-36378-005 piR-34441 ZKSCAN8 GUSBP2 BTN3A2 RNU6-471P ZNF322
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRQ-CTG5-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRQ-CTG5-1 Gene

Genomic Locations for TRQ-CTG5-1 Gene
chr6:27,295,433-27,295,504
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:27,263,212-27,263,283
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRQ-CTG5-1 Gene

Genes around TRQ-CTG5-1 on UCSC Golden Path with GeneCards custom track
TRQ-CTG5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRQ-CTG5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRQ-CTG5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRQ-CTG5-1 Gene

Proteins for TRQ-CTG5-1 Gene

Post-translational modifications for TRQ-CTG5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRQ-CTG5-1 Gene

Domains & Families for TRQ-CTG5-1 Gene

Gene Families for TRQ-CTG5-1 Gene

genes like me logo Genes that share domains with TRQ-CTG5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRQ-CTG5-1 Gene

Function for TRQ-CTG5-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRQ-CTG5-1 Gene

Localization for TRQ-CTG5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRQ-CTG5-1 Gene

Pathways & Interactions for TRQ-CTG5-1 Gene

PathCards logo

SuperPathways for TRQ-CTG5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRQ-CTG5-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRQ-CTG5-1 Gene

Drugs & Compounds for TRQ-CTG5-1 Gene

No Compound Related Data Available

Transcripts for TRQ-CTG5-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRQ-CTG5-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006DA515_9606 tRNA 72 4

HGNC: 34896,

GtRNAdb: tRNA-Gln-CTG-5-1:CM000668.1:27263212-27263283, tRNA-Gln-CTG-5-1:CM000668.2:27295433-27295504,

Rfam: RF00005,

ENA: HG983726.1:1..72:tRNA,

TRQ-CTG5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRQ-CTG5-1 Gene

No ASD Table

Relevant External Links for TRQ-CTG5-1 Gene

GeneLoc Exon Structure for
TRQ-CTG5-1

No data available for mRNA/cDNA for TRQ-CTG5-1 Gene

Expression for TRQ-CTG5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRQ-CTG5-1 Gene

Orthologs for TRQ-CTG5-1 Gene

No data available for Orthologs and Evolution for TRQ-CTG5-1 Gene

Paralogs for TRQ-CTG5-1 Gene

No data available for Paralogs for TRQ-CTG5-1 Gene

Variants for TRQ-CTG5-1 Gene

Additional Variant Information for TRQ-CTG5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRQ-CTG5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRQ-CTG5-1 Gene

Disorders for TRQ-CTG5-1 Gene

No disorders were found for TRQ-CTG5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRQ-CTG5-1 Gene

Publications for TRQ-CTG5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRQ-CTG5-1 Gene

Products for TRQ-CTG5-1 Gene

Sources for TRQ-CTG5-1 Gene