Aliases for TRPC7-AS1 Gene

Subcategory (RNA class) for TRPC7-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TRPC7-AS1 Gene

  • TRPC7 Antisense RNA 1 2 3 5
  • TRPC7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TRPC7-AS1 2 168
  • NONHSAG041631 92
  • HSALNG0045087 167

External Ids for TRPC7-AS1 Gene

Previous GeneCards Identifiers for TRPC7-AS1 Gene

  • GC05P135550

Summaries for TRPC7-AS1 Gene

GeneCards Summary for TRPC7-AS1 Gene

TRPC7-AS1 (TRPC7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TRPC7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRPC7-AS1 Gene

Genomics for TRPC7-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRPC7-AS1 Gene

Promoters and enhancers for TRPC7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J136189 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 500.7 +0.1 67 4.8 ZIC2 ZBTB26 MYC ZNF341 EZH2 MIER1 KMT2B BCL11A SP2 ZBTB17 SMIM32 TRPC7-AS1 lnc-SMIM32-4
GH05J136195 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.7 +4.9 4898 1 ZFHX2 NR2F6 FOXA1 SMIM32 TRPC7-AS1 lnc-SMIM32-4 piR-32956
GH05J136202 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.4 +11.7 11651 1.1 RXRA YY1 NANOG TCF12 SIN3A EP300 DACH1 SP1 EGR1 CTBP2 SMIM32 lnc-SMIM32-4 piR-32956 TRPC7-AS1
GH05J136206 Enhancer 0.2 Ensembl 0.4 +15.2 15195 0.4 SMIM32 piR-32956 lnc-SMIM32-4 TRPC7-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRPC7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRPC7-AS1 Gene

Genomic Locations for TRPC7-AS1 Gene
chr5:136,191,406-136,222,159
(GRCh38/hg38)
Size:
30,754 bases
Orientation:
Plus strand
chr5:135,549,736-135,557,847
(GRCh37/hg19)
Size:
8,112 bases
Orientation:
Plus strand

Genomic View for TRPC7-AS1 Gene

Genes around TRPC7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRPC7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRPC7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRPC7-AS1 Gene

Proteins for TRPC7-AS1 Gene

Post-translational modifications for TRPC7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRPC7-AS1 Gene

Domains & Families for TRPC7-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRPC7-AS1 Gene

Function for TRPC7-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRPC7-AS1 Gene

Localization for TRPC7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRPC7-AS1 Gene

Pathways & Interactions for TRPC7-AS1 Gene

PathCards logo

SuperPathways for TRPC7-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TRPC7-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRPC7-AS1 Gene

Drugs & Compounds for TRPC7-AS1 Gene

No Compound Related Data Available

Transcripts for TRPC7-AS1 Gene

mRNA/cDNA for TRPC7-AS1 Gene

3 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRPC7-AS1 Gene

No ASD Table

Relevant External Links for TRPC7-AS1 Gene

GeneLoc Exon Structure for
TRPC7-AS1

Expression for TRPC7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRPC7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRPC7-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x21.9) and Colon - Transverse (x10.8).
genes like me logo Genes that share expression patterns with TRPC7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRPC7-AS1 Gene

Orthologs for TRPC7-AS1 Gene

Evolution for TRPC7-AS1 Gene

ENSEMBL:
Gene Tree for TRPC7-AS1 (if available)
TreeFam:
Gene Tree for TRPC7-AS1 (if available)

No data available for Orthologs for TRPC7-AS1 Gene

Paralogs for TRPC7-AS1 Gene

No data available for Paralogs for TRPC7-AS1 Gene

Variants for TRPC7-AS1 Gene

Additional Variant Information for TRPC7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRPC7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRPC7-AS1 Gene

Disorders for TRPC7-AS1 Gene

No disorders were found for TRPC7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRPC7-AS1 Gene

Publications for TRPC7-AS1 Gene

No publications were found for TRPC7-AS1 Gene.

No data available for Mastermind for TRPC7-AS1 Gene

Products for TRPC7-AS1 Gene

Sources for TRPC7-AS1 Gene